一种珍稀物种（五味子科）的叶绿体全基因组及系统发育分析
The complete chloroplast genome and phylogenetic analysis of a rare species (Schisandraceae).
作者信息
Chen Huanhuan, Bashir Nawaz Haider, Zhu Lei, Zhao Tong-Xing, Xu Tao, Gao Yong, Sima Yong-Kang
机构信息
College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, China.
School of Ecology and Environmental Science, Yunnan University, Kunming, China.
出版信息
Mitochondrial DNA B Resour. 2024 Dec 12;9(12):1693-1697. doi: 10.1080/23802359.2024.2437099. eCollection 2024.
Lin & Shui, 2011, belongs to the family Schisandraceae and was recently added to the List of National Key Protected Wild Plants in China. We report the complete chloroplast (cp) genome of using Illumina Nova-Seq 6000 platform. The results showed that the cp genome size of was 144,288 bp, which contained a small single-copy (SSC) region (17,862 bp), a large single-copy (LSC) region (93,332 bp), and a pair of inverted repeat (IR) regions (16,547 bp). The cp genome has 40% overall GC content. Annotated genes were 128 in all, including 83 protein-coding genes, eight rRNA genes, and 37 tRNA genes. The phylogenetic analysis showed that was closely related to subsp. This work contributes to the conservation of this species and the evolutionary analysis of Schisandraceae.
林氏五味子（Lin & Shui, 2011）属于五味子科，最近被列入中国国家重点保护野生植物名录。我们使用Illumina Nova-Seq 6000平台报道了其完整的叶绿体（cp）基因组。结果表明，林氏五味子的cp基因组大小为144,288 bp，包含一个小单拷贝（SSC）区域（17,862 bp）、一个大单拷贝（LSC）区域（93,332 bp）和一对反向重复（IR）区域（16,547 bp）。cp基因组的总体GC含量为40%。总共注释了128个基因，包括83个蛋白质编码基因、8个rRNA基因和37个tRNA基因。系统发育分析表明，林氏五味子与[具体物种]亚种密切相关。这项工作有助于该物种的保护以及五味子科的进化分析。
Zotero 插件