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m6A甲基化基因在预测脓毒症预后不良中的作用:识别关键生物标志物和治疗靶点。

The role of m6A methylation genes in predicting poor prognosis in sepsis: identifying key biomarkers and therapeutic targets.

作者信息

Wang Shaokang, Shen Siye, Cheng Na, Zhou Wenjun, Yu Weili, Liang Daiyun, Cao Lijun, Zhang Pinjie, Lu Zhonghua, Sun Yun

机构信息

The Second Affiliated Hospital of Anhui Medical University, 678 Furong Road, Hefei, 230601, Anhui Province, China.

School of Biomedical Engineering, Anhui Medical University, 81 Meishan Road, Hefei, 230032, Anhui Province, China.

出版信息

Eur J Med Res. 2024 Dec 19;29(1):608. doi: 10.1186/s40001-024-02194-8.

Abstract

Sepsis is one of the leading causes of death among seriously ill patients worldwide, affecting more than 30 million people annually and accounting for 1-2% of hospitalizations. By analyzing gene expression omnibus (GEO) data set, our team explored the relationship between m6A methylation gene and poor prognosis of sepsis. The purpose of this present study is to examine new detection markers for patients with poor prognosis, provide theoretical basis for timely intervention and improve the survival rate of patients. First, GSE54514 transcriptome data were extracted from the GEO database 31 patients with sepsis related death and 72 sepsis survivors. Key genes were screened from differentially expressed genes (DEGs), least absolute shrinkage and selection operator (LSAAO) and random forest (RF). And then, METTL3, WTAP and RBM15 were further verified by quantitative reverse transcription PCR (qRT-PCR). The constructed nomogram model showed high accuracy in predicting death. These three genes are mainly involved in chemokine signaling pathway, differentiation of monocytes and T cells, and phagocytosis of immune cells. The analysis showed that a high m6A score subtype is linked to lower immunosuppression and higher survival rates in clinical samples, suggesting better immune responses and outcomes for these patients. Finally, the protective effect of METTL3 in sepsis was demonstrated in mouse sepsis model applied with METTL3 inhibitor, by conducting cell flow cytometry analysis, enzyme-linked immunosorbent assay (ELISA) and hematoxylin-eosin (HE) staining. In conclusion, these findings provide potential biomarkers and targets for early precision diagnosis and treatment.

摘要

脓毒症是全球重症患者的主要死因之一,每年影响超过3000万人,占住院人数的1-2%。通过分析基因表达综合数据库(GEO)数据集,我们的团队探索了m6A甲基化基因与脓毒症预后不良之间的关系。本研究的目的是检测预后不良患者的新检测标志物,为及时干预提供理论依据并提高患者的生存率。首先,从GEO数据库中提取31例脓毒症相关死亡患者和72例脓毒症幸存者的GSE54514转录组数据。从差异表达基因(DEG)、最小绝对收缩和选择算子(LASSO)以及随机森林(RF)中筛选关键基因。然后,通过定量逆转录PCR(qRT-PCR)进一步验证METTL3、WTAP和RBM15。构建的列线图模型在预测死亡方面显示出高准确性。这三个基因主要参与趋化因子信号通路、单核细胞和T细胞的分化以及免疫细胞的吞噬作用。分析表明,高m6A评分亚型与临床样本中较低的免疫抑制和较高的生存率相关,表明这些患者具有更好的免疫反应和预后。最后,通过细胞流式细胞术分析、酶联免疫吸附测定(ELISA)和苏木精-伊红(HE)染色,在应用METTL3抑制剂的小鼠脓毒症模型中证明了METTL3对脓毒症的保护作用。总之,这些发现为早期精准诊断和治疗提供了潜在的生物标志物和靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a485/11657712/abff83d397c2/40001_2024_2194_Fig1_HTML.jpg

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