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(非编码)RNA和单细胞技术临床转化的医学信息学发展现状

A Current Perspective of Medical Informatics Developments for a Clinical Translation of (Non-coding)RNAs and Single-Cell Technologies.

作者信息

Baumann Alexandra, Ahmadi Najia, Wolfien Markus

机构信息

Department of Systems Biology and Bioinformatics, University of Rostock, Rostock, Germany.

Institute for Medical Informatics and Biometry, Faculty of Medicine Carl Gustav Carus, TUD Dresden University of Technology, Dresden, Germany.

出版信息

Methods Mol Biol. 2025;2883:31-51. doi: 10.1007/978-1-0716-4290-0_2.

DOI:10.1007/978-1-0716-4290-0_2
PMID:39702703
Abstract

The journey from laboratory research to clinical practice is marked by significant advancements in the fields of single-cell technologies and non-coding RNA (ncRNA) research. This convergence may reshape our approach to personalized medicine, offering groundbreaking insights and treatments in various clinical settings. This chapter discusses advancements in (nc)RNAs in the clinics, innovations in single-cell technologies and algorithms, and the impact on actual precision medicine, showing the integration of single-cell and ncRNA research can have a tangible impact on precision medicine. Case studies in Oncology, Immunology, and other fields demonstrate how these technologies can guide treatment decisions, tailor therapies to individual patients, and improve outcomes. This approach is particularly potent in addressing diseases with high inter- and intra-tumor heterogeneity. The final sections address standardization, data integration, and analysis challenges because the complexity and volume of data generated by single-cell and ncRNA research poses significant challenges. Medical Informatics is not just a support tool but could be seen as a pivotal component in advancing clinical applications of single-cell and ncRNA research by bridging the gap between bench and bedside. The future of personalized medicine depends on our ability to harness the power of these technologies, and Medical Informatics in combination with ncRNA and single-cell technologies may stand at the forefront of this endeavor.

摘要

从实验室研究到临床实践的旅程以单细胞技术和非编码RNA(ncRNA)研究领域的重大进展为标志。这种融合可能会重塑我们的个性化医疗方法,在各种临床环境中提供开创性的见解和治疗方法。本章讨论了临床中(nc)RNA的进展、单细胞技术和算法的创新,以及对实际精准医疗的影响,表明单细胞和ncRNA研究的整合可以对精准医疗产生切实影响。肿瘤学、免疫学和其他领域的案例研究展示了这些技术如何指导治疗决策、为个体患者量身定制治疗方案并改善治疗结果。这种方法在解决肿瘤间和肿瘤内高度异质性的疾病方面特别有效。最后几节讨论了标准化、数据整合和分析挑战,因为单细胞和ncRNA研究产生的数据的复杂性和数量带来了重大挑战。医学信息学不仅仅是一种支持工具,而是可以被视为通过弥合实验室和床边之间的差距来推进单细胞和ncRNA研究临床应用的关键组成部分。个性化医疗的未来取决于我们利用这些技术力量的能力,而医学信息学与ncRNA和单细胞技术相结合可能站在这一努力的前沿。

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本文引用的文献

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Integrated analysis of transcriptome and epigenome reveals as a potential biomarker in gastric cancer.转录组和表观基因组的综合分析显示 是胃癌的一个潜在生物标志物。
Epigenomics. 2024 Feb;16(3):159-173. doi: 10.2217/epi-2023-0213. Epub 2024 Jan 29.
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A comparative patient-level prediction study in OMOP CDM: applicative potential and insights from synthetic data.在OMOP通用数据模型中进行的一项患者层面的比较预测研究:合成数据的应用潜力与见解
Sci Rep. 2024 Jan 27;14(1):2287. doi: 10.1038/s41598-024-52723-y.
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A fast, scalable and versatile tool for analysis of single-cell omics data.
一种快速、可扩展且功能多样的单细胞组学数据分析工具。
Nat Methods. 2024 Feb;21(2):217-227. doi: 10.1038/s41592-023-02139-9. Epub 2024 Jan 8.
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Nucleic Acids Res. 2024 Jan 5;52(D1):D107-D114. doi: 10.1093/nar/gkad1021.
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scATAC-Ref: a reference of scATAC-seq with known cell labels in multiple species.scATAC-Ref:一个具有多种物种已知细胞标签的 scATAC-seq 参考数据库。
Nucleic Acids Res. 2024 Jan 5;52(D1):D285-D292. doi: 10.1093/nar/gkad924.
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scGRN: a comprehensive single-cell gene regulatory network platform of human and mouse.scGRN:人类和小鼠综合单细胞基因调控网络平台。
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CCR2 macrophage response determines the functional outcome following cardiomyocyte transplantation.CCR2 巨噬细胞反应决定心肌细胞移植后的功能结果。
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Methods Used in the Development of Common Data Models for Health Data: Scoping Review.健康数据通用数据模型开发中使用的方法:范围审查
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Ten Topics to Get Started in Medical Informatics Research.医学信息学研究入门的十个主题
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