Zhou Lei, Liu Danlei, Zhang Zilong, Zhu Yongqiang, Zheng Huajun
Shanghai-MOST Key Laboratory of Health and Disease Genomics, Shanghai Institute for Biomedical and Pharmaceutical Technologies (SIBPT), Fudan University, Shanghai, China.
Department of Microbiology and Immunology, School of Life Sciences, Fudan University, Shanghai, China.
Microbiol Spectr. 2025 Feb 4;13(2):e0110524. doi: 10.1128/spectrum.01105-24. Epub 2024 Dec 20.
The gene , encoding the mannitol transporter subunit IICBA of the phosphotransferase system, was the core gene with the greatest variability in and could be used as a new typing marker in . To expand its application, we performed an evolutionary analysis and found that the gene was present in nine phyla, 371 genera, and 1,662 species of bacteria. It is commonly found in pathogenic species of , followed by , , etc. To investigate whether the gene could serve as a novel typing gene for whole species, we compared the typing effect of the gene with multilocus sequence type (MLST) in 13 common pathogenic species. The results revealed that the gene was present in all common pathogenic species, providing comparable or even higher typing resolution than MLST, especially in , , , and , enabling accurate typing and traceability; however, many species lacked allelic profiles of MLST genes, making it impossible to obtain accurate STs. In summary, these findings validated the potential typing application of the gene in species.IMPORTANCE is a collection of gram-negative bacteria characterized by possessing two chromosomes, which exhibit numerous shared biological and genomic traits. Around 13 species of are known to cause infections in humans. Without appropriate medical interventions, the consequences of these infections can escalate to become life-threatening. Therefore, based on the prevalent characteristics of pathogenic , it is imperative for us to classify and trace various species that cause human illness and prescribe medication rationally to control the spread of diseases. In our investigation, we explored the prevalence and typing accuracy of the gene in . Our findings revealed its ubiquitous presence across typical pathogenic species, offering superior typing efficacy compared with MLST and more extensive implications.
编码磷酸转移酶系统甘露醇转运蛋白亚基IICBA的基因,是[具体研究对象]中变异性最大的核心基因,可作为[具体研究对象]的新型分型标记。为扩大其应用范围,我们进行了进化分析,发现该基因存在于9个门、371个属和1662种细菌中。它常见于[具体病原菌属]的致病物种中,其次是[其他病原菌属]等。为研究该基因是否可作为整个[具体病原菌属]物种的新型分型基因,我们在13种常见致病[具体病原菌属]物种中比较了该基因与多位点序列分型(MLST)的分型效果。结果显示,该基因存在于所有常见致病物种中,提供了与MLST相当甚至更高的分型分辨率,尤其是在[具体菌种1]、[具体菌种2]、[具体菌种3]和[具体菌种4]中,能够实现准确分型和溯源;然而,许多物种缺乏MLST基因的等位基因谱,无法获得准确的序列类型(STs)。总之,这些发现验证了该基因在[具体病原菌属]物种中的潜在分型应用。重要性[具体病原菌属]是一组革兰氏阴性细菌,其特征是拥有两条染色体,表现出许多共同的生物学和基因组特征。已知约有13种[具体病原菌属]会导致人类感染。如果没有适当的医疗干预,这些感染的后果可能会升级为危及生命。因此,基于致病[具体病原菌属]的流行特征,我们必须对引起人类疾病的各种[具体病原菌属]物种进行分类和溯源,并合理用药以控制疾病传播。在我们的研究中,我们探索了[具体病原菌属]中该基因的流行情况和分型准确性。我们的发现揭示了它在典型致病[具体病原菌属]物种中的普遍存在,与MLST相比具有更高的分型效力和更广泛的意义。