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康普茶发酵的宏基因组分析与生物活性剖析:抗氧化、抗菌活性以及对胃癌治疗的分子对接见解

Metagenomic analysis and bioactive profiling of kombucha fermentation: antioxidant, antibacterial activities, and molecular docking insights into gastric cancer therapeutics.

作者信息

Shalini Thavasiaanatham Seenivasan, Prathiviraj Ragothaman, Senthilraja Poomalai

机构信息

Department of Bioinformatics, Bharathidasan University, Palkalaiperur, Tiruchirappalli 620024, Tamil Nadu, India.

Department of Microbiology, Pondicherry University, R.V. Nagar, Kalapet, Puducherry 605014, India.

出版信息

Toxicol Res (Camb). 2024 Dec 21;13(6):tfae224. doi: 10.1093/toxres/tfae224. eCollection 2024 Dec.

Abstract

Kombucha is fermented and produced with a biofilm called a symbiotic culture of bacteria and yeast, which is drunk all over the world for its beneficial effects on human health and energy levels. The metagenomic study of kombucha frequently detected microorganisms in proteobacteria, firmicutes, and actinobacteria. And also, yeast and fungi are Ascomycota and Basidiomycota is present in green leaf and sugarcane juice fermented kombucha. The kombucha extracts' biological activities were assessed using pH, total phenolic content, antioxidant, antibacterial, and anticancer activity. Fermentation may enhance biological activity and the generation of bioactive substances. These results showed the pH -3.1 ± 0.2 and TPC -0.721 μg/mL of gallic acid equivalent. The antioxidant radicals scavenging activity of kombucha was evaluated by DPPH, ABTS, HO and TAC. The bioactive chemicals identified by FT-IR and HR-LC/MS analysis of Kombucha totaled 45 components. The identified compounds were further move on to perform molecular docking study against gastric cancer target proteins 4H9M, 2DQ7 and 1TVO are binding with Nequinate compounds showing best LibDock scores 105.12, 114.49, and 108.97. So, this study suggests that knowledge can potentially active bioactive compounds are present in kombucha and it's stimulated the mechanism of gastrointestinal transit. Additionally, the metagenomic analysis gives strength to understand the bacterial and fungal distribution and its molecular mechanism from Kombucha.

摘要

康普茶是用一种名为细菌和酵母共生培养物的生物膜发酵生产的,因其对人体健康和能量水平有益而在世界各地饮用。对康普茶的宏基因组学研究经常在变形菌门、厚壁菌门和放线菌门中检测到微生物。此外,在绿叶和甘蔗汁发酵的康普茶中存在属于子囊菌门和担子菌门的酵母和真菌。使用pH值、总酚含量、抗氧化、抗菌和抗癌活性来评估康普茶提取物的生物活性。发酵可能会增强生物活性和生物活性物质的生成。这些结果显示pH值为-3.1±0.2,总酚含量为0.721μg/mL没食子酸当量。通过DPPH、ABTS、HO和TAC评估了康普茶的抗氧化自由基清除活性。通过傅里叶变换红外光谱(FT-IR)和高分辨液相色谱/质谱(HR-LC/MS)分析鉴定出的康普茶生物活性化学物质共有45种成分。所鉴定出的化合物进一步进行了针对胃癌靶蛋白4H9M、2DQ7和1TVO的分子对接研究,与Nequinate化合物结合时显示出最佳的LibDock分数,分别为105.12、114.49和108.97。因此,本研究表明康普茶中可能存在具有潜在活性的生物活性化合物,并刺激了胃肠转运机制。此外,宏基因组分析有助于了解康普茶中的细菌和真菌分布及其分子机制。

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