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严重急性呼吸综合征冠状病毒2(SARS-CoV-2)与带电表面之间的静电相互作用:刺突蛋白的进化改变了局面。

Electrostatic Interaction between SARS-CoV-2 and Charged Surfaces: Spike Protein Evolution Changed the Game.

作者信息

Domingo Marc, V Guzman Horacio, Kanduč Matej, Faraudo Jordi

机构信息

Institut de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus de la UAB, E-08193 Bellaterra, Spain.

Departamento de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, 28049 Madrid, Spain.

出版信息

J Chem Inf Model. 2025 Jan 13;65(1):240-251. doi: 10.1021/acs.jcim.4c01724. Epub 2024 Dec 25.

Abstract

Previous works show the key role of electrostatics in the SARS-CoV-2 virus in aspects such as virus-cell interactions or virus inactivation by ionic surfactants. Electrostatic interactions depend strongly on the variant since the charge of the Spike protein (responsible for virus-environment interactions) evolved across the variants from the highly negative Wild Type (WT) to the highly positive Omicron variant. The distribution of the charge also evolved from diffuse to highly localized. These facts suggest that SARS-CoV-2 should interact strongly with charged surfaces in a way that changed during the virus evolution. This question is studied here by computing the electrostatic interaction between WT, Delta and Omicron Spike proteins with charged surfaces using a new method (based on Debye-Hückel theory) that provides efficiently general results as a function of the surface charge density σ. We found that the interaction of the WT and Delta variant spikes with charged surfaces is dominated by repulsive image forces proportional to σ originating at the protein/water interface. On the contrary, the Omicron variant shows a distinct behavior, being strongly attracted to negatively charged surfaces and repelled from positively charged ones. Therefore, the SARS-CoV-2 virus has evolved from being repelled by charged surfaces to being efficiently adsorbing to negatively charged ones.

摘要

先前的研究表明,静电作用在新冠病毒(SARS-CoV-2)的病毒-细胞相互作用或离子型表面活性剂使病毒失活等方面起着关键作用。静电相互作用在很大程度上取决于病毒变体,因为刺突蛋白(负责病毒与环境的相互作用)的电荷在不同变体间发生了演变,从高度带负电的野生型(WT)变为高度带正电的奥密克戎变体。电荷分布也从分散演变为高度集中。这些事实表明,新冠病毒应该会以一种在病毒进化过程中发生变化的方式与带电表面发生强烈相互作用。本文通过一种新方法(基于德拜-休克尔理论)计算野生型、德尔塔和奥密克戎刺突蛋白与带电表面之间的静电相互作用来研究这个问题,该方法能高效地给出作为表面电荷密度σ函数的一般结果。我们发现,野生型和德尔塔变体刺突蛋白与带电表面的相互作用主要由源自蛋白质/水界面、与σ成正比的排斥镜像力主导。相反,奥密克戎变体表现出不同的行为,它会被带负电的表面强烈吸引,而被带正电的表面排斥。因此,新冠病毒已从被带电表面排斥演变为能有效吸附到带负电的表面。

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