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木兰科和八角科某植物的完整叶绿体基因组及其与相关物种的比较分析。 （注：原文中“of and comparative analysis”中间缺少具体物种名称，这里根据语境补充了“某植物”，以便使译文更通顺合理。）

The complete chloroplast genome of and comparative analysis with related species from Magnoliaceae and Illiciaceae.

作者信息

Cao Yingying, Lai Yongxing, Li Zhuxin, Zhai Shanshan, Dai Yinghan, Tao Junyu, Wang Qing, Xu Ziheng, Jiang Minjie, Yu Li, Leng Jing, Tang Haibo

机构信息

Guangxi University of Chinese Medicine, Nanning, China.

Guangxi Vocational University of Agriculture, Nanning, China.

出版信息

Front Genet. 2024 Dec 11;15:1452680. doi: 10.3389/fgene.2024.1452680. eCollection 2024.

DOI:10.3389/fgene.2024.1452680
PMID:39722799
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11668812/
Abstract

(Illiciaceae), an ecologically significant endemic plant, predominantly grows in Guangxi, China, which is the primary region for its cultivation. This area accounts for more than 80% of the total cultivation and yield in China. Despite its importance, comprehensive studies on the chloroplast (cp) genome of are limited. In our research, we sequenced and analyzed the complete cp genome of and conducted a comparative analysis with nine related species from the families Magnoliaceae, Schisandraceae, and Illiciaceae. The cp genome of spans 143,187 base pairs (bp), comprising a large single copy (LSC) region of 100,868 bp, a small single copy (SSC) region of 20,235 bp, and two inverted repeats (IR) regions, each 11,042 bp in length. We identified 81 simple sequence repeats (SSRs) within this genome. The chloroplast genome contains 78 protein-coding genes, 8 ribosomal RNA (rRNA) genes, and 35 transfer RNA (tRNA) genes. Structurally, the IR regions exhibit greater similarity across different genera of Magnoliaceae and Illiciaceae compared to the LSC and SSC regions. Phylogenetic analysis revealed high homology between the cp genome of and those of , , and . These findings suggest that the cp genome of may serve as a valuable genomic resource for elucidating the phylogenetic positions and relationships within the Illiciaceae family. This information will be instrumental for future taxonomic research on species and for advancing genomic studies of these plants.

摘要

八角科（Illiciaceae）是一种具有重要生态意义的特有植物，主要生长在中国广西，该地区是其主要种植区。这一地区的种植面积和产量占中国总量的80%以上。尽管其具有重要性，但对八角科叶绿体（cp）基因组的全面研究仍然有限。在我们的研究中，我们对八角科的完整cp基因组进行了测序和分析，并与木兰科、五味子科和八角科的9个相关物种进行了比较分析。八角科的cp基因组跨度为143,187个碱基对（bp），包括一个100,868 bp的大单拷贝（LSC）区域、一个20,235 bp的小单拷贝（SSC）区域和两个长度均为11,042 bp的反向重复（IR）区域。我们在该基因组中鉴定出81个简单序列重复（SSR）。叶绿体基因组包含78个蛋白质编码基因、8个核糖体RNA（rRNA）基因和35个转移RNA（tRNA）基因。在结构上，与LSC和SSC区域相比，IR区域在木兰科和八角科的不同属之间表现出更大的相似性。系统发育分析表明，八角科的cp基因组与其他相关物种的cp基因组具有高度同源性。这些发现表明，八角科的cp基因组可能是阐明八角科内系统发育位置和关系的有价值的基因组资源。这些信息将有助于未来对八角科物种的分类研究以及推进这些植物的基因组研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/47e2f75040e9/fgene-15-1452680-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/11af5475b4b0/fgene-15-1452680-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/55c801e27653/fgene-15-1452680-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/4597023692ee/fgene-15-1452680-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/1385dbf92f75/fgene-15-1452680-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/3d10eb673057/fgene-15-1452680-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/6c9edb2a95cc/fgene-15-1452680-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/47e2f75040e9/fgene-15-1452680-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/11af5475b4b0/fgene-15-1452680-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/55c801e27653/fgene-15-1452680-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/4597023692ee/fgene-15-1452680-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/1385dbf92f75/fgene-15-1452680-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/3d10eb673057/fgene-15-1452680-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/6c9edb2a95cc/fgene-15-1452680-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a63/11668812/47e2f75040e9/fgene-15-1452680-g007.jpg

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