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使用增强技术评估医学图像分割模型

Evaluating Medical Image Segmentation Models Using Augmentation.

作者信息

Sayed Mattin, Saba-Sadiya Sari, Wichtlhuber Benedikt, Dietz Julia, Neitzel Matthias, Keller Leopold, Roig Gemma, Bucher Andreas M

机构信息

Clinic for Radiology and Nuclear Medicine, University Hospital, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany.

Institut für Informatik, Goethe University Frankfurt, Robert-Mayer-Str 11, 60325 Frankfurt am Main, Germany.

出版信息

Tomography. 2024 Dec 23;10(12):2128-2143. doi: 10.3390/tomography10120150.

DOI:10.3390/tomography10120150
PMID:39728912
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11679113/
Abstract

BACKGROUND

Medical imagesegmentation is an essential step in both clinical and research applications, and automated segmentation models-such as TotalSegmentator-have become ubiquitous. However, robust methods for validating the accuracy of these models remain limited, and manual inspection is often necessary before the segmentation masks produced by these models can be used.

METHODS

To address this gap, we have developed a novel validation framework for segmentation models, leveraging data augmentation to assess model consistency. We produced segmentation masks for both the original and augmented scans, and we calculated the alignment metrics between these segmentation masks.

RESULTS

Our results demonstrate strong correlation between the segmentation quality of the original scan and the average alignment between the masks of the original and augmented CT scans. These results were further validated by supporting metrics, including the coefficient of variance and the average symmetric surface distance, indicating that agreement with augmented-scan segmentation masks is a valid proxy for segmentation quality.

CONCLUSIONS

Overall, our framework offers a pipeline for evaluating segmentation performance without relying on manually labeled ground truth data, establishing a foundation for future advancements in automated medical image analysis.

摘要

背景

医学图像分割在临床和研究应用中都是关键步骤,像TotalSegmentator这样的自动分割模型已无处不在。然而,用于验证这些模型准确性的可靠方法仍然有限,在使用这些模型生成的分割掩码之前,通常需要进行人工检查。

方法

为弥补这一差距,我们开发了一种用于分割模型的新型验证框架,利用数据增强来评估模型一致性。我们为原始扫描和增强扫描都生成了分割掩码,并计算了这些分割掩码之间的对齐指标。

结果

我们的结果表明,原始扫描的分割质量与原始CT扫描和增强CT扫描掩码之间的平均对齐度之间存在很强的相关性。这些结果通过包括方差系数和平均对称表面距离在内的支持指标得到进一步验证,表明与增强扫描分割掩码的一致性是分割质量的有效替代指标。

结论

总体而言,我们的框架提供了一个无需依赖人工标记的地面真值数据即可评估分割性能的流程,为自动医学图像分析的未来发展奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c303/11679113/b26683abd03e/tomography-10-00150-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c303/11679113/78c0f1332723/tomography-10-00150-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c303/11679113/1e1a02342650/tomography-10-00150-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c303/11679113/a202d19d3d52/tomography-10-00150-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c303/11679113/b26683abd03e/tomography-10-00150-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c303/11679113/78c0f1332723/tomography-10-00150-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c303/11679113/1e1a02342650/tomography-10-00150-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c303/11679113/a202d19d3d52/tomography-10-00150-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c303/11679113/b26683abd03e/tomography-10-00150-g004.jpg

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本文引用的文献

1
Intra-Individual Reproducibility of Automated Abdominal Organ Segmentation-Performance of TotalSegmentator Compared to Human Readers and an Independent nnU-Net Model.腹部器官自动分割的个体内再现性——TotalSegmentator与人类阅片者及独立nnU-Net模型的性能比较
J Imaging Inform Med. 2025 Jun;38(3):1617-1627. doi: 10.1007/s10278-024-01265-w. Epub 2024 Sep 18.
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From CNN to Transformer: A Review of Medical Image Segmentation Models.从 CNN 到 Transformer:医学图像分割模型综述。
J Imaging Inform Med. 2024 Aug;37(4):1529-1547. doi: 10.1007/s10278-024-00981-7. Epub 2024 Mar 4.
3
Metrics reloaded: recommendations for image analysis validation.
重新加载指标:图像分析验证的建议。
Nat Methods. 2024 Feb;21(2):195-212. doi: 10.1038/s41592-023-02151-z. Epub 2024 Feb 12.
4
Segment anything in medical images.在医学图像中分割任何内容。
Nat Commun. 2024 Jan 22;15(1):654. doi: 10.1038/s41467-024-44824-z.
5
CFANet: Context Feature Fusion and Attention Mechanism Based Network for Small Target Segmentation in Medical Images.CFANet:基于上下文特征融合和注意力机制的医学图像小目标分割网络。
Sensors (Basel). 2023 Oct 26;23(21):8739. doi: 10.3390/s23218739.
6
TotalSegmentator: Robust Segmentation of 104 Anatomic Structures in CT Images.全段分割器:CT图像中104种解剖结构的稳健分割
Radiol Artif Intell. 2023 Jul 5;5(5):e230024. doi: 10.1148/ryai.230024. eCollection 2023 Sep.
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Segment anything model for medical image analysis: An experimental study.用于医学图像分析的分割模型:一项实验研究。
Med Image Anal. 2023 Oct;89:102918. doi: 10.1016/j.media.2023.102918. Epub 2023 Aug 2.
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Towards a guideline for evaluation metrics in medical image segmentation.迈向医学图像分割评估指标指南。
BMC Res Notes. 2022 Jun 20;15(1):210. doi: 10.1186/s13104-022-06096-y.
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Automated Detection, Segmentation, and Classification of Pericardial Effusions on Chest CT Using a Deep Convolutional Neural Network.使用深度卷积神经网络对胸部CT上心包积液进行自动检测、分割和分类
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Semantic segmentation in medical images through transfused convolution and transformer networks.通过融合卷积和变压器网络实现医学图像中的语义分割
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