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越南 Blume 的 ITS 和一些叶绿体 DNA 区域数据集。

Dataset on ITS and some chloroplast DNA regions of Blume in Vietnam.

作者信息

Nguyen Quan Huu, Van Nguyen Trinh, Vi Thuy Thi Xuan, Vu Thuy Thi Thu, Nguyen Lan Thi Ngoc, Nguyen Yen Thi Hai, Nguyen Hung Duc, Tu Tan Quang, Chu Mau Hoang

机构信息

Thai Nguyen University of Education, Thai Nguyen City, 24000, Viet Nam.

Tay Bac University, Son La City, 34100, Viet Nam.

出版信息

Data Brief. 2024 Dec 3;57:111193. doi: 10.1016/j.dib.2024.111193. eCollection 2024 Dec.

Abstract

Species of the genus have the potential to be natural medicines and have industrial fibre production uses. Many species of this genus are morphologically similar and are difficult to distinguish, especially when their morphology is distorted. This dataset includes sequence information of several DNA regions isolated from the genome of , namely ITS (from the nuclear genome), , trnL-trnF, trnH-psbA, and (from the chloroplast genome) and phylogenetic analysis results based on the isolated sequences. On the phylogenetic tree based on the matK gene sequence, B. holosericea is grouped with with a bootstrap coefficient of 100%. In the phylogenetic tree based on the trnH-psbA spacer region sequences, was grouped with B. clidemioides (a bootstrap coefficient of 96%). In the phylogenetic tree based on the gene sequences, was grouped with (a bootstrap coefficient of 100%). In the phylogenetic tree based on the ITS region sequences, was grouped with B (a bootstrap coefficient of 73%), and based on the trnL-trnF spacer region, was grouped with (a bootstrap coefficient of 16%). Two genes, and and the trnH-psbA region from the chloroplast genome, are potential DNA barcode candidates that could aid in the species identification of . This dataset the first report on the ITS, , trnL-trnF, trnH-psbA, and sequences and the phylogeny of

摘要

该属的物种有成为天然药物的潜力,并且具有工业纤维生产用途。该属的许多物种在形态上相似,难以区分,尤其是当它们的形态发生畸变时。这个数据集包括从该属基因组中分离出的几个DNA区域的序列信息,即ITS(来自核基因组)、matK、trnL-trnF、trnH-psbA,以及psbA-trnH(来自叶绿体基因组),还有基于这些分离序列的系统发育分析结果。在基于matK基因序列的系统发育树上,全缘叶黄精与黄精聚为一类,自展系数为100%。在基于trnH-psbA间隔区序列的系统发育树上,黄精与柳叶黄精聚为一类(自展系数为96%)。在基于psbA-trnH基因序列的系统发育树上,黄精与长梗黄精聚为一类(自展系数为100%)。在基于ITS区域序列的系统发育树上,黄精与滇黄精聚为一类(自展系数为73%),而基于trnL-trnF间隔区,黄精与多花黄精聚为一类(自展系数为16%)。叶绿体基因组中的两个基因matK和psbA-trnH区域是潜在的DNA条形码候选区域,可有助于该属物种的鉴定。这个数据集是关于ITS、matK、trnL-trnF、trnH-psbA和psbA-trnH序列以及该属系统发育的首次报告

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d786/11683258/5f9f078395cc/gr1.jpg

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