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泛基因组学在小众作物改良中的作用。

The role of pangenomics in orphan crop improvement.

作者信息

Hu Haifei, Zhao Junliang, Thomas William J W, Batley Jacqueline, Edwards David

机构信息

Rice Research Institute, Guangdong Academy of Agricultural Sciences & Key Laboratory of Genetics and Breeding of High Quality Rice in Southern China (Co-construction by Ministry and Province), Ministry of Agriculture and Rural Affairs & Guangdong Key Laboratory of Rice Science and Technology, Guangzhou, China.

School of Biological Sciences, University of Western Australia, Perth, WA, Australia.

出版信息

Nat Commun. 2025 Jan 2;16(1):118. doi: 10.1038/s41467-024-55260-4.

DOI:10.1038/s41467-024-55260-4
PMID:39746989
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11696220/
Abstract

Global food security depends heavily on a few staple crops, while orphan crops, despite being less studied, offer the potential benefits of environmental adaptation and enhanced nutritional traits, especially in a changing climate. Major crops have benefited from genomics-based breeding, initially using single genomes and later pangenomes. Recent advances in DNA sequencing have enabled pangenome construction for several orphan crops, offering a more comprehensive understanding of genetic diversity. Orphan crop research has now entered the pangenomics era and applying these pangenomes with advanced selection methods and genome editing technologies can transform these neglected species into crops of broader agricultural significance.

摘要

全球粮食安全在很大程度上依赖于少数几种主粮作物,而小众作物尽管研究较少,但具有环境适应性和增强营养特性等潜在益处,尤其是在气候变化的情况下。主要作物已从基于基因组学的育种中受益,最初是使用单个基因组,后来是泛基因组。DNA测序的最新进展使得能够构建几种小众作物的泛基因组,从而更全面地了解遗传多样性。小众作物研究现已进入泛基因组学时代,将这些泛基因组与先进的选择方法和基因组编辑技术相结合,可以将这些被忽视的物种转变为具有更广泛农业意义的作物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a25/11696220/001ec58c7785/41467_2024_55260_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a25/11696220/7cbe1f50f9d4/41467_2024_55260_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a25/11696220/001ec58c7785/41467_2024_55260_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a25/11696220/7cbe1f50f9d4/41467_2024_55260_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a25/11696220/001ec58c7785/41467_2024_55260_Fig2_HTML.jpg

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Promises and challenges of crop translational genomics.作物转化基因组学的前景与挑战
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Adaptive gene loss in the common bean pan-genome during range expansion and domestication.在普通菜豆泛基因组的范围扩张和驯化过程中适应性基因丢失。
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