Nasr Engy, Amato Pierre, Bernt Matthias, Bhardwaj Anshu, Blankenberg Daniel, Brites Daniela, Cumbo Fabio, Do Katherine, Ferrari Emanuele, Griffin Timothy J, Grüning Björn, Hiltemann Saskia, Hyde Cameron, Jagtap Pratik, Mehta Subina, Métris Kimberly, Momin Saim, Price Gareth R, Oba Asime, Pavloudi Christina, Pechlivanis Nikos, Péguilhan Raphaëlle, Psomopoulos Fotis, Rosic Nedeljka, Schatz Michael C, Schiml Valerie Claudia, Siguret Cléa, Soranzo Nicola, Stubbs Andrew, van Heusden Peter, Vohra Mustafa, Zierep Paul, Batut Bérénice
Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Koehler-Allee 106, D-79110 Freiburg, Germany.
Université Clermont Auvergne, CNRS, Laboratoire Microorganismes: Génomes et Environnement (LMGE), F-63000, Clermont-Ferrand, France.
bioRxiv. 2025 Mar 26:2024.12.23.629682. doi: 10.1101/2024.12.23.629682.
Microbial research generates vast and complex data from diverse omics technologies, demanding innovative analytical solutions. The microGalaxy community addresses these needs with the Microbiology Lab, a user-friendly platform that integrates 290+ tool suites and 85+ curated workflows for microbial analyses, including taxonomic profiling, assembly, annotation, and functional analysis. Hosted on several public Galaxy servers (microbiology.usegalaxy.org, .eu, .org.au, .fr), it supports workflow creation & customization, sharing, and updates across public and private Galaxy servers, ensuring flexibility and reproducibility. The platform also offers 35+ tutorials, 15+ instructional videos, and structured learning pathways, empowering researchers to conduct advanced analyses. Backed by a community-driven approach, the Microbiology Galaxy Lab ensures up-to-date tools and workflows through testing and semi-automatic updates to meet global research demands. With its focus on rapid workflow prototyping and high-throughput processing, the Microbiology Galaxy Lab provides scalable resources for researchers at all expertise levels.
微生物研究通过各种组学技术生成了大量复杂的数据,这就需要创新的分析解决方案。microGalaxy社区通过微生物学实验室满足了这些需求,该实验室是一个用户友好的平台,集成了290多个工具套件和85多个经过精心策划的微生物分析工作流程,包括分类学分析、组装、注释和功能分析。它托管在多个公共Galaxy服务器(microbiology.usegalaxy.org、.eu、.org.au、.fr)上,支持跨公共和私有Galaxy服务器创建和定制工作流程、共享及更新,确保了灵活性和可重复性。该平台还提供35多个教程、15多个教学视频以及结构化的学习路径,使研究人员能够进行高级分析。在社区驱动的方法支持下,微生物学Galaxy实验室通过测试和半自动更新确保工具和工作流程与时俱进,以满足全球研究需求。凭借其对快速工作流程原型设计和高通量处理的关注,微生物学Galaxy实验室为各个专业水平的研究人员提供了可扩展的资源。