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挖掘基因宝藏:探寻黎巴嫩失落的本土品种。

Unearthing Genetic Treasures: Exploring Lost Autochthonous Varieties in Lebanon.

作者信息

Saliba Carole, Vargas Alba María, Andrés María Teresa de, Lamy Françoise, Boukhdoud Liliane, Kahale Rhea, Robert Thierry, Azzi Rani, Abinader Noel, Bou Dagher Kharrat Magda

机构信息

Laboratoire Biodiversité et Génomique Fonctionnelle, Faculté des Sciences, Université Saint-Joseph, Campus Sciences et Technologies, Mar Roukos, Mkalles, P.O. Box 1514, Riad el Solh, Beirut 1107 2050, Lebanon.

Instituto Madrileño de Investigación y Desarrollo Rural, Agrario y Alimentario (IMIDRA), Finca El Encín, Ctra. A2, Km 38200, 28805 Alcalá de Henares, Spain.

出版信息

Genes (Basel). 2024 Dec 17;15(12):1617. doi: 10.3390/genes15121617.

Abstract

BACKGROUND/OBJECTIVES: Lebanon, one of the oldest centers of grapevine ( L.) cultivation, is home to a rich diversity of local grape varieties. This biodiversity is linked to the country's unique topography and millennia of cultural history. However, the wine industry primarily utilizes international varieties, putting many local varieties at risk of extinction.

METHODS

In this study, we analyzed 202 samples from old vineyards, home gardens, and private collections using 21 microsatellite markers to assess their identity and genetic diversity.

RESULTS

A total of 67 different genotypes were identified, with 34 not matching any existing profiles in the consulted databases, based on comparisons with the European Vitis Database, the Vitis International Variety Catalogue (VIVC), and the databases established in two previous studies conducted in Armenia and Lebanon. Cluster analyses revealed Lebanon's rich diversity of local grape varieties, highlighting cases of synonymy, homonymy, and misnaming. All loci were polymorphic, with 228 alleles and an average of 11.4 alleles being detected. The highest number of alleles was observed at the VVIV67 locus (19 alleles), while the lowest was found at the VVIQ52 and VVIN73 loci (5 alleles). The observed heterozygosity was 0.732, slightly below the expected value of 0.757, with gene diversity varying among the markers.

CONCLUSIONS

Of the 67 genetic profiles identified, 34 are absent from national and international databases, underscoring Lebanon as a hotspot for grapevine genetic diversity. This unique genetic variation, which includes several synonyms due to geographic isolation, could provide valuable opportunities for producing distinctive wines and emphasizes the need for further research and documentation.

摘要

背景/目的:黎巴嫩是最古老的葡萄(Vitis vinifera L.)种植中心之一,拥有丰富多样的本地葡萄品种。这种生物多样性与该国独特的地形和数千年的文化历史相关联。然而,葡萄酒行业主要使用国际品种,这使得许多本地品种面临灭绝风险。

方法

在本研究中,我们使用21个微卫星标记对来自老葡萄园、家庭花园和私人收藏的202个样本进行了分析,以评估它们的身份和遗传多样性。

结果

共鉴定出67种不同的基因型,根据与欧洲葡萄数据库、葡萄国际品种目录(VIVC)以及之前在亚美尼亚和黎巴嫩进行的两项研究中建立的数据库进行比较,其中34种与咨询数据库中现有的任何图谱都不匹配。聚类分析揭示了黎巴嫩本地葡萄品种的丰富多样性,突出了同义词、同音词和命名错误的情况。所有位点均为多态性,共检测到228个等位基因,平均每个位点有11.4个等位基因。在VVIV67位点观察到的等位基因数量最多(19个),而在VVIQ52和VVIN73位点观察到的等位基因数量最少(5个)。观察到的杂合度为0.732,略低于预期值0.757,基因多样性在不同标记之间有所不同。

结论

在鉴定出的67个遗传图谱中,有34个在国家和国际数据库中不存在,这突出表明黎巴嫩是葡萄遗传多样性的热点地区。这种独特的遗传变异,包括由于地理隔离产生的几个同义词,可为生产独特的葡萄酒提供宝贵机会,并强调了进一步研究和记录的必要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0ba5/11675416/b7559d781c48/genes-15-01617-g001.jpg

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