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利用核磁共振技术结合机器学习工具绘制血栓形成血清标志物图谱。

Mapping Thrombosis Serum Markers by H-NMR Allied with Machine Learning Tools.

作者信息

Martins Lucas G, Manzini Bruna M, Montalvão Silmara, Honorato Millene A, Colella Marina P, Hayakawa Gabriela G Y, de Paula Erich V, Orsi Fernanda A, Braga Erik S, Avramović Nataša, Omage Folurunsho Bright, Tasic Ljubica, Annichino-Bizzacchi Joyce M

机构信息

Laboratory of Biological Chemistry, Department of Organic Chemistry, Institute of Chemistry, Universidade Estadual de Campinas, Campinas 13083-862, SP, Brazil.

Laboratory of Hemostasis, Hemocentro-Unicamp, Universidade Estadual de Campinas, Campinas 13083-878, SP, Brazil.

出版信息

Molecules. 2024 Dec 13;29(24):5895. doi: 10.3390/molecules29245895.

DOI:10.3390/molecules29245895
PMID:39769984
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11676712/
Abstract

Machine learning and artificial intelligence tools were used to investigate the discriminatory potential of blood serum metabolites for thromboembolism and antiphospholipid syndrome (APS). H-NMR-based metabonomics data of the serum samples of patients with arterial or venous thromboembolism (VTE) without APS (n = 32), thrombotic primary APS patients (APS, n = 32), and healthy controls (HCs) (n = 32) were investigated. Unique metabolic profiles between VTE and HCs, APS and HCs, and between VTE and triple-positive APS groups were indicative of the significant alterations in the metabolic pathways of glycolysis, the TCA cycle, lipid metabolism, and branched-chain amino acid (BCAA) metabolism, and pointed to the complex pathogenesis mechanisms of APS and VTE. Histidine, 3-hydroxybutyrate, and threonine were shown to be the top three metabolites with the most substantial impact on model predictions, suggesting that these metabolites play a pivotal role in distinguishing among APS, VTE, and HCs. These metabolites might be potential biomarkers to differentiate APS and VTE patients.

摘要

使用机器学习和人工智能工具来研究血清代谢物对血栓栓塞和抗磷脂综合征(APS)的鉴别潜力。对无APS的动脉或静脉血栓栓塞(VTE)患者(n = 32)、血栓形成性原发性APS患者(APS,n = 32)和健康对照者(HCs)(n = 32)的血清样本进行了基于氢核磁共振(H-NMR)的代谢组学数据研究。VTE与HCs、APS与HCs以及VTE与三阳性APS组之间独特的代谢谱表明糖酵解、三羧酸循环、脂质代谢和支链氨基酸(BCAA)代谢途径存在显著改变,并指出了APS和VTE复杂的发病机制。组氨酸、3-羟基丁酸和苏氨酸被证明是对模型预测影响最大的前三种代谢物,表明这些代谢物在区分APS、VTE和HCs中起关键作用。这些代谢物可能是区分APS和VTE患者的潜在生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/6542413e832a/molecules-29-05895-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/770805512b80/molecules-29-05895-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/1b7816f33ae4/molecules-29-05895-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/c11231a2e6fa/molecules-29-05895-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/679881175b4d/molecules-29-05895-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/8b98bba14725/molecules-29-05895-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/6542413e832a/molecules-29-05895-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/770805512b80/molecules-29-05895-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/1b7816f33ae4/molecules-29-05895-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/c11231a2e6fa/molecules-29-05895-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/679881175b4d/molecules-29-05895-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/8b98bba14725/molecules-29-05895-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5447/11676712/6542413e832a/molecules-29-05895-g006.jpg

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本文引用的文献

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Thromb Res. 2023 Apr;224:1-3. doi: 10.1016/j.thromres.2023.02.005. Epub 2023 Feb 10.
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A targetable pathway in neutrophils mitigates both arterial and venous thrombosis.中性粒细胞靶向通路可同时减轻动脉和静脉血栓形成。
Sci Transl Med. 2022 Aug 31;14(660):eabj7465. doi: 10.1126/scitranslmed.abj7465.
3
Metabolite, protein, and tissue dysfunction associated with COVID-19 disease severity.
与 COVID-19 疾病严重程度相关的代谢物、蛋白质和组织功能障碍。
Sci Rep. 2022 Jul 16;12(1):12204. doi: 10.1038/s41598-022-16396-9.
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Serum Metabolic Profiles Based on Nuclear Magnetic Resonance Spectroscopy among Patients with Deep Vein Thrombosis and Healthy Controls.基于核磁共振波谱的深静脉血栓形成患者与健康对照者的血清代谢谱
Metabolites. 2021 Dec 16;11(12):874. doi: 10.3390/metabo11120874.
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Metabolomic Profile in Venous Thromboembolism (VTE).静脉血栓栓塞症(VTE)的代谢组学特征
Metabolites. 2021 Jul 29;11(8):495. doi: 10.3390/metabo11080495.
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Coordinated Modulation of Energy Metabolism and Inflammation by Branched-Chain Amino Acids and Fatty Acids.支链氨基酸和脂肪酸对能量代谢和炎症的协同调节。
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