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新种,一种来自俄罗斯重油储层的新型球形嗜盐螺旋体,对该属的修订描述,将[具体物种名称]重新分类为新属[新属名称],即[新组合名称],并提议建立新科[新科名称]

sp. nov., a novel spherical halotolerant spirochete from a Russian heavy oil reservoir, emended description of the genus , reclassification of to a new genus gen. nov. as comb. nov. and proposal of fam. nov.

作者信息

Bidzhieva Salimat Kh, Sokolova Diyana Sh, Grouzdev Denis S, Kostrikina Nadezhda A, Poltaraus Andrey B, Tourova Tatyana P, Shcherbakova Viktoria A, Troshina Olga Yu, Nazina Tamara N

机构信息

Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences, Prospect 60-letiya Oktyabrya, 7/2, Moscow, 117312, Russia.

Institute of Bioengineering, Research Center of Biotechnology, Russian Academy of Sciences, Prospect 60-letiya Oktyabrya, 7/1, Moscow, 117312, Russia.

出版信息

Int J Syst Evol Microbiol. 2020 Aug;70(8):4748-4759. doi: 10.1099/ijsem.0.004340.

Abstract

Anaerobic, fermentative, halotolerant bacteria, strains 4-11 and 585, were isolated from production water of two low-temperature petroleum reservoirs (Russia) and were characterized by using a polyphasic approach. Cells of the strains were spherical, non-motile and 0.30-2.5 µm in diameter. Strain 4-11 grew optimally at 35 °C, pH 6.0 and 1.0-2.0% (w/v) NaCl. Both strains grew chemoorganotrophically with mono-, di- and trisaccharides. The major cellular fatty acids of both strains were C, C, C ω9 and C 3-OH. Major polar lipids were glycolipids and phospholipids. The 16S rRNA gene sequences of the strains 4-11 and 585 had 99.9% similarity and were most closely related to the sequence of GLS2 (96.9, and 97.0% similarity, respectively). The G+C content of the genomic DNA of strains 4-11 and 585 were 46.8 and 46.9%, respectively. The average nucleotide identity and digital DNA-DNA hybridization values between the genomes of strain 4-11 and GLS2 were 73.0 and 16.9%, respectively. Results of phylogenomic metrics analysis of the genomes and 120 core proteins of strains 4-11 and 585 and their physiological and biochemical characteristics confirmed that the strains represented a novel species of the genus , for which the name sp. nov. is proposed, with the type strain 4-11 (=VKM B-3269=KCTC 15833). Based on the results of phylogenetic analysis, was reclassified as member of a new genus gen. nov., comb. nov. The genera and form a separate clade, for which a novel family, fam. nov., is proposed.

摘要

从俄罗斯两个低温石油储层的采出水中分离出了厌氧、发酵、耐盐细菌菌株4-11和585,并采用多相方法对其进行了表征。这些菌株的细胞呈球形,无运动性,直径为0.30-2.5 µm。菌株4-11在35℃、pH 6.0和1.0-2.0%(w/v)NaCl条件下生长最佳。两种菌株均以单糖、二糖和三糖进行化能有机营养生长。两种菌株的主要细胞脂肪酸为C、C、C ω9和C 3-OH。主要极性脂质为糖脂和磷脂。菌株4-11和585的16S rRNA基因序列相似度为99.9%,与GLS2序列的关系最为密切(相似度分别为96.9%和97.0%)。菌株4-11和585基因组DNA的G+C含量分别为46.8%和46.9%。菌株4-11与GLS2基因组之间的平均核苷酸同一性和数字DNA-DNA杂交值分别为73.0%和16.9%。对菌株4-11和585的基因组及120个核心蛋白进行系统基因组指标分析的结果以及它们的生理生化特性证实,这些菌株代表了一个新的属种,为此提出新种名 sp. nov.,模式菌株为4-11(=VKM B-3269=KCTC 15833)。基于系统发育分析结果, 被重新分类为一个新属 gen. nov.的成员, comb. nov.。 属和 属形成一个单独的进化枝,为此提出一个新科 fam. nov.。

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