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将可解释性融入机器学习和深度神经网络:一种用于新冠症状学和疫苗效力中特征重要性及异常检测的新方法。

Integrating Interpretability in Machine Learning and Deep Neural Networks: A Novel Approach to Feature Importance and Outlier Detection in COVID-19 Symptomatology and Vaccine Efficacy.

作者信息

Jacob Khoury Shadi, Zoabi Yazeed, Scheinowitz Mickey, Shomron Noam

机构信息

Faculty of Medical and Health Sciences, Tel Aviv University, Tel Aviv 6997801, Israel.

Department of Biomedical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv 6997801, Israel.

出版信息

Viruses. 2024 Nov 29;16(12):1864. doi: 10.3390/v16121864.

DOI:10.3390/v16121864
PMID:39772174
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11680429/
Abstract

In this study, we introduce a novel approach that integrates interpretability techniques from both traditional machine learning (ML) and deep neural networks (DNN) to quantify feature importance using global and local interpretation methods. Our method bridges the gap between interpretable ML models and powerful deep learning (DL) architectures, providing comprehensive insights into the key drivers behind model predictions, especially in detecting outliers within medical data. We applied this method to analyze COVID-19 pandemic data from 2020, yielding intriguing insights. We used a dataset consisting of individuals who were tested for COVID-19 during the early stages of the pandemic in 2020. The dataset included self-reported symptoms and test results from a wide demographic, and our goal was to identify the most important symptoms that could help predict COVID-19 infection accurately. By applying interpretability techniques to both machine learning and deep learning models, we aimed to improve understanding of symptomatology and enhance early detection of COVID-19 cases. Notably, even though less than 1% of our cohort reported having a sore throat, this symptom emerged as a significant indicator of active COVID-19 infection, appearing 7 out of 9 times in the top four most important features across all methodologies. This suggests its potential as an early symptom marker. Studies have shown that individuals reporting sore throat may have a compromised immune system, where antibody generation is not functioning correctly. This aligns with our data, which indicates that 5% of patients with sore throats required hospitalization. Our analysis also revealed a concerning trend of diminished immune response post-COVID infection, increasing the likelihood of severe cases requiring hospitalization. This finding underscores the importance of monitoring patients post-recovery for potential complications and tailoring medical interventions accordingly. Our study also raises critical questions about the efficacy of COVID-19 vaccines in individuals presenting with sore throat as a symptom. The results suggest that booster shots might be necessary for this population to ensure adequate immunity, given the observed immune response patterns. The proposed method not only enhances our understanding of COVID-19 symptomatology but also demonstrates its broader utility in medical outlier detection. This research contributes valuable insights to ongoing efforts in creating interpretable models for COVID-19 management and vaccine optimization strategies. By leveraging feature importance and interpretability, these models empower physicians, healthcare workers, and researchers to understand complex relationships within medical data, facilitating more informed decision-making for patient care and public health initiatives.

摘要

在本研究中,我们引入了一种新颖的方法,该方法整合了传统机器学习(ML)和深度神经网络(DNN)的可解释性技术,以使用全局和局部解释方法来量化特征重要性。我们的方法弥合了可解释的ML模型与强大的深度学习(DL)架构之间的差距,为模型预测背后的关键驱动因素提供了全面的见解,尤其是在检测医学数据中的异常值方面。我们应用此方法分析了2020年的新冠疫情数据,得出了有趣的见解。我们使用了一个数据集,该数据集由在2020年疫情早期接受新冠病毒检测的个体组成。该数据集包括来自广泛人群的自我报告症状和检测结果,我们的目标是确定能够有助于准确预测新冠病毒感染的最重要症状。通过将可解释性技术应用于机器学习和深度学习模型,我们旨在增进对症状学的理解,并加强对新冠病例的早期检测。值得注意的是,尽管我们队列中不到1%的人报告有喉咙痛,但该症状却成为了活跃的新冠病毒感染的一个重要指标,在所有方法中,它有7次出现在最重要的四个特征之中。这表明了它作为早期症状标志物的潜力。研究表明,报告有喉咙痛的个体可能免疫系统受损,抗体生成功能不正常。这与我们的数据相符,数据表明5%有喉咙痛的患者需要住院治疗。我们的分析还揭示了新冠感染后免疫反应减弱的一个令人担忧的趋势,增加了需要住院治疗的严重病例的可能性。这一发现强调了在患者康复后监测潜在并发症并相应调整医疗干预措施的重要性。我们的研究还对新冠疫苗在有喉咙痛症状的个体中的有效性提出了关键问题。结果表明,鉴于观察到的免疫反应模式,这一人群可能需要接种加强针以确保足够的免疫力。所提出的方法不仅增进了我们对新冠症状学的理解,还展示了其在医学异常值检测中的更广泛用途。这项研究为正在进行的创建用于新冠管理和疫苗优化策略的可解释模型的努力提供了有价值的见解。通过利用特征重要性和可解释性,这些模型使医生、医护人员和研究人员能够理解医学数据中的复杂关系,促进为患者护理和公共卫生举措做出更明智的决策。

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