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通过引入多语义和标签特征来扩展多哥身份识别（TogoID）中身份转换的概念。

Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features.

作者信息

Ikeda Shuya, Aoki-Kinoshita Kiyoko F, Chiba Hirokazu, Goto Susumu, Hosoda Masae, Kawashima Shuichi, Kim Jin-Dong, Moriya Yuki, Ohta Tazro, Ono Hiromasa, Takatsuki Terue, Yamamoto Yasunori, Katayama Toshiaki

机构信息

Database Center for Life Science, Joint Support-Center for Data Science Research, Research Organization of Information and Systems, Kashiwa, Chiba, Japan.

Graduate School of Science and Engineering, Soka University, Hachioji, Tokyo, Japan.

出版信息

J Biomed Semantics. 2025 Jan 8;16(1):1. doi: 10.1186/s13326-024-00322-1.

DOI:10.1186/s13326-024-00322-1
PMID:39780290
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11708180/
Abstract

BACKGROUND

TogoID ( https://togoid.dbcls.jp/ ) is an identifier (ID) conversion service designed to link IDs across diverse categories of life science databases. With its ability to obtain IDs related in different semantic relationships, a user-friendly web interface, and a regular automatic data update system, TogoID has been a valuable tool for bioinformatics.

RESULTS

We have recently expanded TogoID's ability to represent semantics between datasets, enabling it to handle multiple semantic relationships within dataset pairs. This enhancement enables TogoID to distinguish relationships such as "glycans bind to proteins" or "glycans are processed by proteins" between glycans and proteins. Additional new features include the ability to display labels corresponding to database IDs, making it easier to interpret the relationships between the various IDs available in TogoID, and the ability to convert labels to IDs, extending the entry point for ID conversion. The implementation of URL parameters, which reproduces the state of TogoID's web application, allows users to share complex search results through a simple URL.

CONCLUSIONS

These advancements improve TogoID's utility in bioinformatics, allowing researchers to explore complex ID relationships. By introducing the tool's multi-semantic and label features, TogoID expands the concept of ID conversion and supports more comprehensive and efficient data integration across life science databases.

摘要

背景

TogoID（https://togoid.dbcls.jp/）是一种标识符（ID）转换服务，旨在连接生命科学数据库不同类别中的ID。凭借获取具有不同语义关系的ID的能力、用户友好的网络界面以及定期自动数据更新系统，TogoID一直是生物信息学的宝贵工具。

结果

我们最近扩展了TogoID表示数据集之间语义的能力，使其能够处理数据集对中的多种语义关系。这一增强功能使TogoID能够区分聚糖与蛋白质之间的“聚糖与蛋白质结合”或“聚糖由蛋白质加工”等关系。其他新功能包括显示与数据库ID对应的标签的能力，这使得更容易解释TogoID中可用的各种ID之间的关系，以及将标签转换为ID的能力，扩展了ID转换的入口点。URL参数的实现可重现TogoID网络应用程序的状态，允许用户通过简单的URL共享复杂的搜索结果。

结论

这些进展提高了TogoID在生物信息学中的实用性，使研究人员能够探索复杂的ID关系。通过引入该工具的多语义和标签功能，TogoID扩展了ID转换的概念，并支持跨生命科学数据库进行更全面、高效的数据集成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/c777cccfcfc7/13326_2024_322_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/42959f408b5d/13326_2024_322_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/88a316b39ba9/13326_2024_322_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/f6c7eb357388/13326_2024_322_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/4e3c891328f0/13326_2024_322_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/d720d5aebe15/13326_2024_322_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/c777cccfcfc7/13326_2024_322_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/42959f408b5d/13326_2024_322_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/88a316b39ba9/13326_2024_322_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/f6c7eb357388/13326_2024_322_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/4e3c891328f0/13326_2024_322_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/d720d5aebe15/13326_2024_322_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5832/11708180/c777cccfcfc7/13326_2024_322_Fig6_HTML.jpg

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本文引用的文献

1
The Reactome Pathway Knowledgebase 2024.Reactome 通路知识库 2024.
Nucleic Acids Res. 2024 Jan 5;52(D1):D672-D678. doi: 10.1093/nar/gkad1025.
2
UniProt: the Universal Protein Knowledgebase in 2023.UniProt：2023 年的通用蛋白质知识库。
Nucleic Acids Res. 2023 Jan 6;51(D1):D523-D531. doi: 10.1093/nar/gkac1052.
3
PubChem 2023 update.PubChem 2023 更新。
Nucleic Acids Res. 2023 Jan 6;51(D1):D1373-D1380. doi: 10.1093/nar/gkac956.
4
TogoID: an exploratory ID converter to bridge biological datasets.TogoID：一种探索性的 ID 转换器，用于桥接生物数据集。
Bioinformatics. 2022 Sep 2;38(17):4194-4199. doi: 10.1093/bioinformatics/btac491.
5
The IntAct database: efficient access to fine-grained molecular interaction data.IntAct 数据库：高效访问细粒度分子相互作用数据。
Nucleic Acids Res. 2022 Jan 7;50(D1):D648-D653. doi: 10.1093/nar/gkab1006.
6
The international glycan repository GlyTouCan version 3.0.国际聚糖库 GlyTouCan 版本 3.0。
Nucleic Acids Res. 2021 Jan 8;49(D1):D1529-D1533. doi: 10.1093/nar/gkaa947.
7
Open Agile text mining for bioinformatics: the PubAnnotation ecosystem.开放的生物信息学敏捷文本挖掘：PubAnnotation 生态系统。
Bioinformatics. 2019 Nov 1;35(21):4372-4380. doi: 10.1093/bioinformatics/btz227.
8
NBDC RDF portal: a comprehensive repository for semantic data in life sciences.NBDC RDF 门户：生命科学中语义数据的综合知识库。
Database (Oxford). 2018 Jan 1;2018:bay123. doi: 10.1093/database/bay123.
9
ClinVar: improving access to variant interpretations and supporting evidence.ClinVar：改善变异解读和支持证据的获取。
Nucleic Acids Res. 2018 Jan 4;46(D1):D1062-D1067. doi: 10.1093/nar/gkx1153.
10
The Lectin Frontier Database (LfDB), and data generation based on frontal affinity chromatography.凝集素前沿数据库（LfDB）以及基于前沿亲和色谱的数据生成。
Molecules. 2015 Jan 8;20(1):951-73. doi: 10.3390/molecules20010951.