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国际聚糖库 GlyTouCan 版本 3.0。

The international glycan repository GlyTouCan version 3.0.

机构信息

Graduate School of Science and Engineering, Soka University, Tokyo 192-8577, Japan.

The Noguchi Institute, Tokyo 173-0003, Japan.

出版信息

Nucleic Acids Res. 2021 Jan 8;49(D1):D1529-D1533. doi: 10.1093/nar/gkaa947.

DOI:10.1093/nar/gkaa947
PMID:33125071
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7779025/
Abstract

Glycans serve important roles in signaling events and cell-cell communication, and they are recognized by lectins, viruses and bacteria, playing a variety of roles in many biological processes. However, there was no system to organize the plethora of glycan-related data in the literature. Thus GlyTouCan (https://glytoucan.org) was developed as the international glycan repository, allowing researchers to assign accession numbers to glycans. This also aided in the integration of glycan data across various databases. GlyTouCan assigns accession numbers to glycans which are defined as sets of monosaccharides, which may or may not be characterized with linkage information. GlyTouCan was developed to be able to recognize any level of ambiguity in glycans and uniquely assign accession numbers to each of them, regardless of the input text format. In this manuscript, we describe the latest update to GlyTouCan in version 3.0, its usage, and plans for future development.

摘要

糖链在信号事件和细胞间通讯中发挥着重要作用,它们被凝集素、病毒和细菌识别,在许多生物过程中发挥着多种作用。然而,文献中没有系统地组织大量的糖链相关数据。因此,GlyTouCan(https://glytoucan.org)被开发为国际糖链数据库,允许研究人员为糖链分配访问号。这也有助于整合来自不同数据库的糖链数据。GlyTouCan 为糖链分配访问号,这些糖链被定义为一组单糖,可能具有或不具有连接信息的特征。GlyTouCan 的开发目的是能够识别糖链中的任何程度的模糊性,并为每个糖链唯一地分配访问号,而不考虑输入文本的格式。在本文中,我们描述了 GlyTouCan 在版本 3.0 中的最新更新、它的用法以及未来的发展计划。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bace/7779025/13fd1c4baa76/gkaa947fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bace/7779025/cdad4cdfd7f5/gkaa947fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bace/7779025/d035f7fa3277/gkaa947fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bace/7779025/10d327e902ef/gkaa947fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bace/7779025/ca37eb7f95c9/gkaa947fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bace/7779025/13fd1c4baa76/gkaa947fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bace/7779025/cdad4cdfd7f5/gkaa947fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bace/7779025/d035f7fa3277/gkaa947fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bace/7779025/10d327e902ef/gkaa947fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bace/7779025/ca37eb7f95c9/gkaa947fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bace/7779025/13fd1c4baa76/gkaa947fig5.jpg

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2
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Nat Commun. 2019 Jul 22;10(1):3275. doi: 10.1038/s41467-019-11131-x.
3
GlycanFormatConverter: a conversion tool for translating the complexities of glycans.糖基格式转换器:一种用于转换聚糖复杂性的转换工具。
基于质谱的复杂生物样品载玻片上消化组织的糖组学和蛋白质组学分析
Methods Mol Biol. 2025;2884:279-303. doi: 10.1007/978-1-0716-4298-6_18.
4
Updates implemented in version 4 of the GlyCosmos Glycoscience Portal.糖科学门户(GlyCosmos)第4版中实施的更新。
Anal Bioanal Chem. 2025 Feb;417(5):907-919. doi: 10.1007/s00216-024-05692-0. Epub 2024 Dec 17.
5
Cooperation of GlycoPOST and UniCarb-DR towards a comprehensive glycomics data repository workflow.GlycoPOST与UniCarb-DR在全面糖组学数据存储库工作流程方面的合作。
Anal Bioanal Chem. 2025 Feb;417(5):1015-1023. doi: 10.1007/s00216-024-05673-3. Epub 2024 Nov 29.
6
ProCogGraph: a graph-based mapping of cognate ligand domain interactions.ProCogGraph:基于同源配体结构域相互作用的图谱
Bioinform Adv. 2024 Oct 22;4(1):vbae161. doi: 10.1093/bioadv/vbae161. eCollection 2024.
7
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Anal Bioanal Chem. 2025 Feb;417(5):945-956. doi: 10.1007/s00216-024-05508-1. Epub 2024 Aug 30.
8
Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy.聚糖的功能意义及其整理:在意大利帕多瓦举行的第 16 届国际生物整理会议研讨会上获得的认识。
Database (Oxford). 2024 Aug 13;2024. doi: 10.1093/database/baae073.
9
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Anal Bioanal Chem. 2025 Feb;417(5):865-878. doi: 10.1007/s00216-024-05459-7. Epub 2024 Aug 12.
10
Overview and limitations of database in global traditional medicines: A narrative review.全球传统医学数据库概述与局限性:一篇叙述性综述
Acta Pharmacol Sin. 2025 Feb;46(2):235-263. doi: 10.1038/s41401-024-01353-1. Epub 2024 Aug 2.
Bioinformatics. 2019 Jul 15;35(14):2434-2440. doi: 10.1093/bioinformatics/bty990.
4
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5
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6
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