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非洲未充分利用的树木作物金苹果的基因组序列草图

Draft genome sequence of Kei apple, an underutilized African tree crop.

作者信息

Kariba Robert, Waweru Bernice, Njaci Isaac, Banda Linly, Mwangi Jenniffer W, Harimanantsoa R Antso, Muthemba Samuel, Featherstone Jonathan, Hendre Prasad, Jamnadass Ramni, Van Deynze Allen, Domelevo Entfellner Jean-Baka, Shorinola Oluwaseyi

机构信息

World Agroforestry, P.O Box 30677, Nairobi, 00100, Kenya.

International Livestock Research Institute, P.O. Box 30709, Nairobi, 00100, Kenya.

出版信息

Sci Data. 2025 Jan 15;12(1):70. doi: 10.1038/s41597-025-04414-0.

DOI:10.1038/s41597-025-04414-0
PMID:39814784
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11735937/
Abstract

To address food and nutrition security in the face of burgeoning global populations and erratic climatic conditions there is a need to include nutrient dense, climatic resilient but neglected indigenous fruit trees in agrifood systems. Here we present the draft genome sequence of Kei Apple, Dovyalis afra, a neglected indigenous African fruit tree with untapped potential to contribute to nutrient security and improved livelihoods. Our long-read-based genome assembly comprises 440 Mbp sequence across 1190 contigs with a N50 and L50 of 13.3 Mbp and 11, respectively. We also annotated the genome and identified 27,449 protein-coding genes. Our genome assembly provides a valuable resource for unlocking the food security and nutraceutical potential of Kei apple.

摘要

面对全球人口不断增长和气候条件不稳定的情况,为解决粮食和营养安全问题,有必要将营养丰富、适应气候且被忽视的本土果树纳入农业食品系统。在此,我们展示了非洲酪李(Dovyalis afra)的基因组序列草图,这是一种被忽视的非洲本土果树,具有尚未开发的潜力,可为营养安全和改善生计做出贡献。我们基于长读长的基因组组装包含跨越1190个重叠群的440兆碱基序列,N50和L50分别为13.3兆碱基和11。我们还对基因组进行了注释,并鉴定出27449个蛋白质编码基因。我们的基因组组装为挖掘非洲酪李的粮食安全和营养保健潜力提供了宝贵资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11735937/748b1d54f8d9/41597_2025_4414_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11735937/d828d4fc77f6/41597_2025_4414_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11735937/69e022083b5b/41597_2025_4414_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11735937/748b1d54f8d9/41597_2025_4414_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11735937/d828d4fc77f6/41597_2025_4414_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11735937/69e022083b5b/41597_2025_4414_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f2ea/11735937/748b1d54f8d9/41597_2025_4414_Fig3_HTML.jpg

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本文引用的文献

1
UniProt: the Universal Protein Knowledgebase in 2023.UniProt:2023 年的通用蛋白质知识库。
Nucleic Acids Res. 2023 Jan 6;51(D1):D523-D531. doi: 10.1093/nar/gkac1052.
2
InterPro in 2022.InterPro 在 2022 年。
Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427. doi: 10.1093/nar/gkac993.
3
Anticancer, antioxidant, antiviral and antimicrobial activities of Kei Apple (Dovyalis caffra) fruit.基纳苹果(Dovyalis caffra)的抗癌、抗氧化、抗病毒和抗菌活性。
Sci Rep. 2022 Apr 8;12(1):5914. doi: 10.1038/s41598-022-09993-1.
4
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.eggNOG-mapper v2:宏基因组尺度的功能注释、直系同源物分配和结构域预测。
Mol Biol Evol. 2021 Dec 9;38(12):5825-5829. doi: 10.1093/molbev/msab293.
5
High-molecular weight DNA extraction, clean-up and size selection for long-read sequencing.用于长读长测序的高分子量DNA提取、纯化及大小选择
PLoS One. 2021 Jul 15;16(7):e0253830. doi: 10.1371/journal.pone.0253830. eCollection 2021.
6
Proximate Analyses and Amino Acid Composition of Selected Wild Indigenous Fruits of Southern Africa.南部非洲部分野生本土水果的近似分析与氨基酸组成
Plants (Basel). 2021 Apr 8;10(4):721. doi: 10.3390/plants10040721.
7
RepeatModeler2 for automated genomic discovery of transposable element families.RepeatModeler2 用于自动发现转座元件家族的基因组。
Proc Natl Acad Sci U S A. 2020 Apr 28;117(17):9451-9457. doi: 10.1073/pnas.1921046117. Epub 2020 Apr 16.
8
Fast and accurate long-read assembly with wtdbg2.使用 wtdbg2 实现快速准确的长读长序列组装。
Nat Methods. 2020 Feb;17(2):155-158. doi: 10.1038/s41592-019-0669-3. Epub 2019 Dec 9.
9
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.基于图的基因组比对和基因分型与 HISAT2 和 HISAT-genotype。
Nat Biotechnol. 2019 Aug;37(8):907-915. doi: 10.1038/s41587-019-0201-4. Epub 2019 Aug 2.
10
Performance of neural network basecalling tools for Oxford Nanopore sequencing.基于神经网络的牛津纳米孔测序碱基调用工具的性能。
Genome Biol. 2019 Jun 24;20(1):129. doi: 10.1186/s13059-019-1727-y.