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人类和非人类灵长类动物发育GTEx项目。

The human and non-human primate developmental GTEx projects.

作者信息

Coorens Tim H H, Guillaumet-Adkins Amy, Kovner Rothem, Linn Rebecca L, Roberts Victoria H J, Sule Amrita, Van Hoose Patrick M

机构信息

Broad Institute of MIT and Harvard, Cambridge, MA, USA.

Yale University, New Haven, CT, USA.

出版信息

Nature. 2025 Jan;637(8046):557-564. doi: 10.1038/s41586-024-08244-9. Epub 2025 Jan 15.

Abstract

Many human diseases are the result of early developmental defects. As most paediatric diseases and disorders are rare, children are critically underrepresented in research. Functional genomics studies primarily rely on adult tissues and lack critical cell states in specific developmental windows. In parallel, little is known about the conservation of developmental programmes across non-human primate (NHP) species, with implications for human evolution. Here we introduce the developmental Genotype-Tissue Expression (dGTEx) projects, which span humans and NHPs and aim to integrate gene expression, regulation and genetics data across development and species. The dGTEx cohort will consist of 74 tissue sites across 120 human donors from birth to adulthood, and developmentally matched NHP age groups, with additional prenatal and adult animals, with 126 rhesus macaques (Macaca mulatta) and 72 common marmosets (Callithrix jacchus). The data will comprise whole-genome sequencing, extensive bulk, single-cell and spatial gene expression profiles, and chromatin accessibility data across tissues and development. Through community engagement and donor diversity, the human dGTEx study seeks to address disparities in genomic research. Thus, dGTEx will provide a reference human and NHP dataset and tissue bank, enabling research into developmental changes in expression and gene regulation, childhood disorders and the effect of genetic variation on development.

摘要

许多人类疾病是早期发育缺陷的结果。由于大多数儿科疾病和病症都很罕见,儿童在研究中的代表性严重不足。功能基因组学研究主要依赖于成人组织,并且在特定发育阶段缺乏关键的细胞状态。与此同时,对于非人类灵长类(NHP)物种间发育程序的保守性了解甚少,这对人类进化具有重要意义。在此,我们介绍发育基因-组织表达(dGTEx)项目,该项目涵盖人类和非人类灵长类动物,旨在整合跨发育阶段和物种的基因表达、调控及遗传学数据。dGTEx队列将包括来自120名人类供体从出生到成年的74个组织部位,以及发育阶段匹配的非人类灵长类动物年龄组,还有额外的产前和成年动物,其中有126只恒河猴(猕猴)和72只普通狨猴(绢毛猴)。数据将包括全基因组测序、广泛的批量、单细胞和空间基因表达谱,以及跨组织和发育阶段的染色质可及性数据。通过社区参与和供体多样性,人类dGTEx研究旨在解决基因组研究中的差异问题。因此,dGTEx将提供一个人类和非人类灵长类动物的参考数据集及组织库,有助于研究表达和基因调控的发育变化、儿童疾病以及遗传变异对发育的影响。

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The human and non-human primate developmental GTEx projects.人类和非人类灵长类动物发育GTEx项目。
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