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弗氏菌属菌株SM1641的全基因组序列,该菌株是从西南印度洋深海热液沉积物中分离出的一种产海洋胞外多糖细菌。

Complete genome sequence of Vreelandella sp. SM1641, a marine exopolysaccharide-producing bacterium isolated from deep-sea hydrothermal sediment of the Southwest Indian Ocean.

作者信息

Zhu Hai-Xia, Tang Zhi-Gang, Cai Shi-Ning, Cheng Jun-Hui, Wang Peng, Sun Mei-Ling

机构信息

State Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao 266237, China.

College of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao 266003, China.

出版信息

Mar Genomics. 2025 Mar 15;79:101150. doi: 10.1016/j.margen.2024.101150. Epub 2024 Nov 2.

Abstract

Vreelandella sp. SM1641 was isolated from the hydrothermal vent sediment of the southwest Indian Ocean at a water depth of 2519 m. The complete genome sequence of strain SM1641 was analyzed to understand its metabolic capacities and biosynthesis potential of natural products in this study. The genome of strain SM1641 consists of a circular chromosome and two plasmids. The length of the circular chromosome was 4,731,121 bp with GC content of 54.46 mol%, and the length of plasmid A was 302,095 bp with GC content of 54.95 mol%, and the length of plasmid B was 8857 bp with GC content of 46.31 mol%. Genomic data showed that strain SM1641 had several gene clusters involved in the synthesis of exopolysaccharides (EPSs) and polyhydroxyalkanoates (PHAs) synthesis. SM1641 also has a variety of genes that respond to osmotic stress, heat shock, cold shock, oxidative stress, and heavy metal stress, which plays a critical role in bacterial adaptation to hydrothermal environments. Therefore, genome sequencing and data mining of strain SM1641 are helpful to further understand the molecular mechanism of Vreelandella adapting to the deep-sea hydrothermal environment, and provide a basis for further experimental exploration.

摘要

Vreelandella sp. SM1641是从西南印度洋水深2519米的热液喷口沉积物中分离出来的。在本研究中,对菌株SM1641的完整基因组序列进行了分析,以了解其代谢能力和天然产物的生物合成潜力。菌株SM1641的基因组由一条环状染色体和两个质粒组成。环状染色体长度为4,731,121 bp,GC含量为54.46 mol%,质粒A长度为302,095 bp,GC含量为54.95 mol%,质粒B长度为8857 bp,GC含量为46.31 mol%。基因组数据显示,菌株SM1641有几个参与胞外多糖(EPSs)合成和聚羟基脂肪酸酯(PHAs)合成的基因簇。SM1641还具有多种响应渗透压、热休克、冷休克、氧化应激和重金属应激的基因,这些基因在细菌适应热液环境中起着关键作用。因此,菌株SM1641的基因组测序和数据挖掘有助于进一步了解Vreelandella适应深海热液环境的分子机制,并为进一步的实验探索提供依据。

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