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BlsE底物自由基的电子顺磁共振表征有助于深入了解区分自由基S-腺苷甲硫氨酸二醇脱水酶与脱氢酶的反应结果决定因素。

EPR Characterization of the BlsE Substrate Radical Offers Insight into the Determinants of Reaction Outcome that Distinguish Radical SAM Dioldehydratases from Dehydrogenases.

作者信息

Ma Baixu, Lee Yu-Hsuan, Ruszczycky Mark W, Ren Daan, Engstrom Amelia, Liu Hung-Wen, Tao Lizhi

机构信息

Department of Chemistry, Southern University of Science and Technology, Shenzhen 518055, China.

Division of Chemical Biology & Medicinal Chemistry, College of Pharmacy, University of Texas at Austin, Austin, Texas 78712, United States.

出版信息

J Am Chem Soc. 2025 Feb 5;147(5):4111-4119. doi: 10.1021/jacs.4c13307. Epub 2025 Jan 25.

Abstract

A small but growing set of radical SAM (-adenosyl-l-methionine) enzymes catalyze the radical mediated dehydration or dehydrogenation of 1,2-diol substrates. In some cases, these activities can be interchanged via minor structural perturbations to the reacting components raising questions regarding the relative importance of hyperconjugation, proton circulation and leaving group stability in determining the reaction outcome. The present work describes trapping and electron paramagnetic resonance (EPR) characterization of an α-hydroxyalkyl radical intermediate during dehydration and dehydrogenation of cytosylglucuronic acid and its derivatives catalyzed by the radical SAM enzyme BlsE and its Glu189Ala mutant from the blasticidin S biosynthetic pathway. The substrate radical is found to have a dihedral angle between the electron spin carrier p-orbital and the C-O bond to be cleaved that appears to be sufficient to support elimination despite lying outside the strictly periplanar region. A more significant contributor to the gating of dehydration activity, however, appears to be establishment of a proper hydrogen bonding configuration in order to stabilize the accumulation of negative charge on the eliminated hydroxyl group.

摘要

一小部分但数量在不断增加的自由基S-腺苷-L-甲硫氨酸(SAM)酶催化1,2-二醇底物的自由基介导脱水或脱氢反应。在某些情况下,通过对反应组分进行微小的结构扰动,这些活性可以相互转换,这引发了关于超共轭、质子循环和离去基团稳定性在决定反应结果方面相对重要性的问题。本研究描述了在杀稻瘟菌素S生物合成途径中的自由基SAM酶BlsE及其Glu189Ala突变体催化胞嘧啶葡萄糖醛酸及其衍生物脱水和脱氢过程中α-羟烷基自由基中间体的捕获和电子顺磁共振(EPR)表征。发现底物自由基在电子自旋载体p轨道与待断裂的C-O键之间具有二面角,尽管该二面角位于严格的平面区域之外,但似乎足以支持消除反应。然而,对脱水活性门控作用更大的因素似乎是建立适当的氢键构型,以便稳定消除的羟基上负电荷的积累。

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本文引用的文献

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Mechanism of Radical Initiation in the Radical SAM Enzyme Superfamily.自由基 SAM 酶超家族中自由基引发的机制。
Annu Rev Biochem. 2023 Jun 20;92:333-349. doi: 10.1146/annurev-biochem-052621-090638. Epub 2023 Apr 4.

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