Ni Danlei, Wu Jiayi, Pan Jingjing, Liang Yajing, Xu Zihui, Yan Zhiying, Xu Kequn, Wei Feifei
Department of Oncology, The Third Affiliated Hospital of Nanjing Medical University, Changzhou, China.
Front Genet. 2025 Jan 3;15:1475378. doi: 10.3389/fgene.2024.1475378. eCollection 2024.
Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive malignancy characterized by a dismal prognosis. Treatment outcomes exhibit substantial variability across patients, underscoring the urgent need for robust predictive models to effectively estimate survival probabilities and therapeutic responses in PDAC.
Metabolic and immune-related genes exhibiting differential expression were identified using the TCGA-PDAC and GTEx datasets. A genetic prognostic model was developed via univariable Cox regression analysis on a training cohort. Predictive accuracy was assessed using Kaplan-Meier (K-M) curves, calibration plots, and ROC curves. Additional analyses, including GSAE and immune cell infiltration studies, were conducted to explore relevant biological mechanisms and predict therapeutic efficacy.
An 8-gene prognostic model (AK2, CXCL11, TYK2, ANGPT4, IL20RA, MET, ENPP6, and CA12) was established. Three genes (AK2, ENPP6, and CA12) were associated with metabolism, while the others were immune-related. Most genes correlated with poor prognosis. Validation in TCGA-PDAC and GSE57495 datasets demonstrated robust performance, with AUC values for 1-, 3-, and 5-year OS exceeding 0.7. The model also effectively predicted responses to adjuvant therapy.
This 8-gene signature enhances prognostic accuracy and therapeutic decision-making in PDAC, offering valuable insights for clinical applications and personalized treatment strategies.
胰腺导管腺癌(PDAC)是一种侵袭性很强的恶性肿瘤,预后很差。不同患者的治疗结果差异很大,这突出表明迫切需要强大的预测模型来有效估计PDAC患者的生存概率和治疗反应。
使用TCGA-PDAC和GTEx数据集鉴定出表达存在差异的代谢和免疫相关基因。通过对训练队列进行单变量Cox回归分析,建立了一个基因预后模型。使用Kaplan-Meier(K-M)曲线、校准图和ROC曲线评估预测准确性。进行了包括基因集富集分析(GSAE)和免疫细胞浸润研究在内的其他分析,以探索相关生物学机制并预测治疗效果。
建立了一个包含8个基因的预后模型(AK2、CXCL11、TYK2、ANGPT4、IL20RA、MET、ENPP6和CA12)。其中3个基因(AK2、ENPP6和CA12)与代谢相关,其他基因与免疫相关。大多数基因与不良预后相关。在TCGA-PDAC和GSE57495数据集中的验证表明该模型性能良好,1年、3年和5年总生存期的AUC值超过0.7。该模型还能有效预测辅助治疗的反应。
这个8基因特征增强了PDAC的预后准确性和治疗决策能力,为临床应用和个性化治疗策略提供了有价值的见解。