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新种和新种,两种从中国东海海洋沉积物中分离出的细菌。

sp. nov. and sp. nov., two bacteria isolated from marine sediment in the East China Sea.

作者信息

Wang Hao, Wang Huiting, Liu Xinyu, Jung Dawoon, Seo Eun-Young, He Shan, Zhang Weiyan, Ding Lijian

机构信息

Li Dak Sum Yip Yio Chin Kenneth Li Marine Biopharmaceutical Research Center, Ningbo University, Ningbo 315800, PR China.

School of Pharmacy, Ningbo University, Ningbo 315211, PR China.

出版信息

Int J Syst Evol Microbiol. 2025 Jan;75(1). doi: 10.1099/ijsem.0.006653.

Abstract

Two Gram-stain-negative, curved-rod-shaped, non-motile and aerobic bacteria W6 and I13 were isolated from marine sediment samples collected from Meishan Island located in the East China Sea. Catalase and oxidase activities and hydrolysis of Tween 40, 60 and 80 were positive for both strains, while nitrate reduction, indole production, methyl red reaction and HS production were negative. Phylogenetic analyses based on 16S rRNA and genome sequences revealed that strains W6 and I13 formed distinct phylogenetic lineages within the genera and , respectively. Strain W6 showed the closest relatedness to N5DA8-2C with 93.9% 16S rRNA gene sequence similarity, 70.7% average nucleotide identity (ANI), 71.0% average amino acid identity (AAI) and 16.4% digital DNA-DNA hybridization (dDDH) values, while strain I13 was most closely related to YM3-301 with 92.1% 16S rRNA gene sequence similarity, 70.5% ANI, 72.1% AAI and 17.2% dDDH values. The two novel strains shared 92.0% 16S rRNA gene sequence similarity to each other and were identified as two distinct species based on 70.7% ANI, 70.4% AAI and 17.1% dDDH values calculated using whole-genome sequences. The genomes of strains W6 and I13 were 4.59 Mbp with a G+C content of 34.5 mol% and 2.38 Mbp with a G+C content of 36.2 mol%, respectively. The only respiratory quinone was menaquinone-6, the major polar lipid was phosphatidylethanolamine and the major cellular fatty acids were iso-C, iso-C G and iso-C 3-OH. Based on phenotypic, chemotaxonomic and genotypic data, strains W6 and I13 are considered to represent two novel species in the genera and , respectively, in the family Flavobacteriaceae, for which the names sp. nov. and sp. nov. are proposed. The type strains are W6 (=KCTC 102201=MCCC 1K08928) and I13 (=KCTC 102202=MCCC 1K08929), respectively.

摘要

从中国东海梅山岛采集的海洋沉积物样本中分离出两株革兰氏阴性、弯曲杆状、无运动性的需氧细菌W6和I13。两株菌的过氧化氢酶和氧化酶活性以及吐温40、60和80的水解反应均为阳性,而硝酸盐还原、吲哚产生、甲基红反应和硫化氢产生均为阴性。基于16S rRNA和基因组序列的系统发育分析表明,菌株W6和I13分别在属和属内形成了不同的系统发育谱系。菌株W6与N5DA8-2C的亲缘关系最近,16S rRNA基因序列相似性为93.9%,平均核苷酸同一性(ANI)为70.7%,平均氨基酸同一性(AAI)为71.0%,数字DNA-DNA杂交(dDDH)值为16.4%;而菌株I13与YM3-301的亲缘关系最为密切,16S rRNA基因序列相似性为92.1%,ANI为70.5%,AAI为72.1%,dDDH值为17.2%。这两株新菌株的16S rRNA基因序列相似性为92.0%,根据全基因组序列计算的ANI为70.7%、AAI为70.4%、dDDH值为17.1%,被鉴定为两个不同的物种。菌株W6和I13的基因组大小分别为4.59 Mbp,G+C含量为34.5 mol%和2.38 Mbp,G+C含量为36.2 mol%。唯一的呼吸醌为甲基萘醌-6,主要极性脂为磷脂酰乙醇胺,主要细胞脂肪酸为异-C、异-C G和异-C 3-OH。基于表型、化学分类和基因型数据,菌株W6和I13分别被认为代表黄杆菌科属和属中的两个新物种,为此提出新物种名称sp. nov.和sp. nov.。模式菌株分别为W6(=KCTC 102201=MCCC 1K08928)和I13(=KCTC 102202=MCCC 1K08929)。

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