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通过分子动力学模拟深入了解GLUT1中d-葡萄糖加速交换的机制。

Insight into the Mechanism of d-Glucose Accelerated Exchange in GLUT1 from Molecular Dynamics Simulations.

作者信息

Domene Carmen, Wiley Brian, Gonzalez-Resines Saul, Naftalin Richard J

机构信息

Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom.

BHF Centre of Research Excellence, School of Medicine and Life Sciences, King's College London, London SE1 9NH, United Kingdom.

出版信息

Biochemistry. 2025 Feb 18;64(4):928-939. doi: 10.1021/acs.biochem.4c00502. Epub 2025 Jan 28.

DOI:10.1021/acs.biochem.4c00502
PMID:39874207
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11840925/
Abstract

Transmembrane glucose transport, facilitated by glucose transporters (GLUTs), is commonly understood through the simple mobile carrier model (SMCM), which suggests that the central binding site alternates exposure between the inside and outside of the cell, facilitating glucose exchange. An alternative "multisite model" posits that glucose transport is a stochastic diffusion process between ligand-operated gates within the transporter's central channel. This study aims to test these models by conducting atomistic molecular dynamics simulations of multiple glucose molecules docked along the central cleft of GLUT1 at temperatures both above and below the lipid bilayer melting point. Our results show that glucose exchanges occur on a nanosecond time-scale as glucopyranose rings slide past each other within the channel cavities, with minimal protein conformational movement. While bilayer gelation slows net glucose transit, the frequency of positional exchanges remains consistent across both temperatures. This supports the observation that glucose exchange at 0 °C is much faster than net flux, aligning with experimental data that show approximately 100 times the rate of exchange flux relative to net flux at 0 °C compared to 37 °C.

摘要

由葡萄糖转运蛋白(GLUTs)介导的跨膜葡萄糖转运,通常通过简单移动载体模型(SMCM)来理解,该模型表明中央结合位点在细胞内外交替暴露,促进葡萄糖交换。另一种“多位点模型”假定葡萄糖转运是转运蛋白中央通道内配体操作门之间的随机扩散过程。本研究旨在通过对多个葡萄糖分子沿GLUT1中央裂隙对接进行原子分子动力学模拟来检验这些模型,模拟温度高于和低于脂质双分子层熔点。我们的结果表明,葡萄糖交换发生在纳秒时间尺度上,因为吡喃葡萄糖环在通道腔内相互滑过,蛋白质构象运动极小。虽然双层凝胶化减缓了葡萄糖的净转运,但位置交换频率在两个温度下保持一致。这支持了在0°C时葡萄糖交换比净通量快得多的观察结果,与实验数据一致,实验数据显示0°C时交换通量速率相对于37°C时的净通量约为100倍。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/a5fad99e72ff/bi4c00502_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/eecc58ed4f2a/bi4c00502_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/96538dca36e9/bi4c00502_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/10d537ec86a4/bi4c00502_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/782779dd58c1/bi4c00502_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/d078c18b25cc/bi4c00502_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/ed0fab924089/bi4c00502_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/3488489619d2/bi4c00502_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/a5fad99e72ff/bi4c00502_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/eecc58ed4f2a/bi4c00502_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/96538dca36e9/bi4c00502_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/10d537ec86a4/bi4c00502_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/782779dd58c1/bi4c00502_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/d078c18b25cc/bi4c00502_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/ed0fab924089/bi4c00502_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/3488489619d2/bi4c00502_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259b/11840925/a5fad99e72ff/bi4c00502_0008.jpg

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本文引用的文献

1
Quantitative Analysis of 2D EXSY NMR Spectra of Strongly Coupled Spin Systems in Transmembrane Exchange.强耦合自旋体系跨膜交换二维 EXSY NMR 谱的定量分析。
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2
Multiple Interactions of Glucose with the Extra-Membranous Loops of GLUT1 Aid Transport.葡萄糖与 GLUT1 外跨膜环的多次相互作用有助于转运。
J Chem Inf Model. 2021 Jul 26;61(7):3559-3570. doi: 10.1021/acs.jcim.1c00310. Epub 2021 Jul 14.
3
Structures and General Transport Mechanisms by the Major Facilitator Superfamily (MFS).
主要易化超家族(MFS)的结构和一般转运机制。
Chem Rev. 2021 May 12;121(9):5289-5335. doi: 10.1021/acs.chemrev.0c00983. Epub 2021 Apr 22.
4
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Biochem Biophys Res Commun. 2019 Apr 9;511(3):573-578. doi: 10.1016/j.bbrc.2019.02.067. Epub 2019 Feb 27.
5
A Glimpse of Membrane Transport through Structures-Advances in the Structural Biology of the GLUT Glucose Transporters.透过结构看膜转运——GLUT 葡萄糖转运体的结构生物学研究进展。
J Mol Biol. 2017 Aug 18;429(17):2710-2725. doi: 10.1016/j.jmb.2017.07.009. Epub 2017 Jul 26.
6
Membrane Phase-Dependent Occlusion of Intramolecular GLUT1 Cavities Demonstrated by Simulations.模拟显示分子内GLUT1腔的膜相依赖性封闭
Biophys J. 2017 Mar 28;112(6):1176-1184. doi: 10.1016/j.bpj.2017.01.030.
7
GLUT, SGLT, and SWEET: Structural and mechanistic investigations of the glucose transporters.葡萄糖转运蛋白(GLUT)、钠-葡萄糖协同转运蛋白(SGLT)和己糖转运蛋白(SWEET):葡萄糖转运蛋白的结构与机制研究
Protein Sci. 2016 Mar;25(3):546-58. doi: 10.1002/pro.2858. Epub 2016 Jan 4.
8
Molecular Dynamics Simulations of the Human Glucose Transporter GLUT1.人类葡萄糖转运蛋白GLUT1的分子动力学模拟
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9
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J Membr Biol. 2014 Nov;247(11):1161-79. doi: 10.1007/s00232-014-9711-7. Epub 2014 Aug 28.
10
All-atom empirical potential for molecular modeling and dynamics studies of proteins.蛋白质分子建模和动力学研究的全原子经验势。
J Phys Chem B. 1998 Apr 30;102(18):3586-616. doi: 10.1021/jp973084f.