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基于布尔网络和无网格模拟的计算机工具,用于预测化疗药物全身给药中的反应和转运机制。

In-silico tool based on Boolean networks and meshless simulations for prediction of reaction and transport mechanisms in the systemic administration of chemotherapeutic drugs.

作者信息

Vélez Salazar Fabián Mauricio, Patiño Iván David

机构信息

Grupo de Investigación e Innovación Ambiental (GIIAM), Institución Universitaria Pascual Bravo, Medellín, Colombia.

出版信息

PLoS One. 2025 Feb 7;20(2):e0315194. doi: 10.1371/journal.pone.0315194. eCollection 2025.

Abstract

Using in-house computational tools, this work focuses on investigating how the combination of the electric field magnitude (E), bloodstream velocity (λinl) and pharmaco-kinetic profile (PK) impacts the reaction and transport mechanisms of drug (RTMs) arising in electro-chemotherapeutic treatments. The first step implies retrieving the ratios between extracellular, free intracellular, and bound intracellular concentrations from numerical simulations, employing a meshless code developed, calibrated and validated in a previous work. Subsequently, a Boolean model is developed to determine the presence, interaction and rates of RTMs based on the comparison of the spatio-temporal evolution of the drug concentration ratios, being this the main contribution of the present work to the comprehension of the phenomena involved in the systemic administration of chemotherapeutic drugs in cancer tumors. Different combinations of E (0 kV/m, 46 kV/m, 70 kV/m), λinl (1x10-4m/s, 1x10-3m/s, 1x10-2m/s) and PK (One-short tri-exponential, mono-exponential) are examined. In general, results show that both the presence and relative importance of RTMs can differ between both PKs for a given combination of E and λinl. Additionally, for a given PK, radial uniformity of transmembrane transport rate is aversively affected by the increase of E and λinl, whereas radial homogeneity of association/dissociation rate is monotonously affected only by E. Regarding the axial uniformity of transmembrane transport rate, this is benefited by the increase of λinl and, in a lower extent, by the reduction of E.

摘要

利用内部计算工具,这项工作着重研究电场强度(E)、血流速度(λinl)和药代动力学特征(PK)的组合如何影响电化学治疗中药物的反应和传输机制(RTMs)。第一步意味着从数值模拟中获取细胞外、游离细胞内和结合细胞内浓度之间的比率,采用在先前工作中开发、校准和验证的无网格代码。随后,基于药物浓度比率时空演变的比较,开发了一个布尔模型来确定RTMs的存在、相互作用和速率,这是本工作对理解癌症肿瘤中化疗药物全身给药所涉及现象的主要贡献。研究了E(0 kV/m、46 kV/m、70 kV/m)、λinl(1×10⁻⁴m/s、1×10⁻³m/s、1×10⁻²m/s)和PK(单次三指数、单指数)的不同组合。总体而言,结果表明,对于给定的E和λinl组合,两种PK之间RTMs的存在和相对重要性可能不同。此外,对于给定的PK,跨膜传输速率的径向均匀性会受到E和λinl增加的不利影响,而缔合/解离速率的径向均匀性仅受E的单调影响。关于跨膜传输速率的轴向均匀性,它会因λinl的增加而受益,并且在较小程度上会因E的降低而受益。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1323/11805580/38dbec526656/pone.0315194.g001.jpg

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