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作为新型抗糖尿病抑制剂针对二肽基肽酶IV酶的衍射酸的计算机模拟评估

In-silico evaluation of diffractaic acid as novel anti-diabetic inhibitor against dipeptidyl peptidase IV enzyme.

作者信息

Roney Miah, Issahaku Abdul Rashid, Dubey Amit, Tufail Aisha, Istiaque Hamim S M, Wilhelm Anke, Aluwi Mohd Fadhlizil Fasihi Mohd

机构信息

Faculty of Industrial Sciences and Technology, Universiti Malaysia Pahang Al-Sultan Abdullah, Lebuhraya Persiaran Tun Khalil Yaakob, 26300 Gambang, Kuantan, Pahang Malaysia.

Centre for Bio-aromatic Research, Universiti Malaysia Pahang Al-Sultan Abdullah, Lebuhraya Persiaran Tun Khalil Yaakob, 26300 Gambang, Kuantan, Pahang Malaysia.

出版信息

In Silico Pharmacol. 2025 Feb 10;13(1):24. doi: 10.1007/s40203-025-00321-9. eCollection 2025.

Abstract

UNLABELLED

Diabetes mellitus (DM) is one of the most common long-term metabolic illnesses with detrimental implications on health and 90-95% of DM cases worldwide are caused by type 2 diabetes (T2DM). The side effects of the existing medicines include vomiting, diarrhea, and serious damage to the kidneys, blood vessels, and nerves. Therefore, finding anti-diabetic medications without side effects is crucial. The main goal of this work is to find anti-diabetic inhibitors using in-silico evaluation techniques such as molecular docking, molecular dynamic simulation, principal component analysis, and drug probability analysis. The DPP-IV is one of numerous molecular targets implicated in the pathogenesis of DM and Diffractaic acid (DF) was docked into the active site of this enzyme to assess the inhibitory effect of DF. In addition, MD simulation and PCA were used to assess the stability of docked complex. Furthermore, the DF was then subjected to drug probability investigations. The binding affinity of the DF was - 40.2476 kcal/mol, which was comparable to the reference compound (- 43.0908 kcal/mol). Furthermore, the compound was in a stable structure, as demonstrated by MD simulation and PCA analysis. Based on drug probability tests, DF also demonstrated druggable qualities. The results of this investigation suggest that DF may function as a possible inhibitor against DM; nevertheless, more in vitro and in vivo investigations are required to validate the activity and other properties.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s40203-025-00321-9.

摘要

未标注

糖尿病(DM)是最常见的长期代谢性疾病之一,对健康有不利影响,全球90 - 95%的糖尿病病例由2型糖尿病(T2DM)引起。现有药物的副作用包括呕吐、腹泻以及对肾脏、血管和神经的严重损害。因此,寻找无副作用的抗糖尿病药物至关重要。这项工作的主要目标是使用分子对接、分子动力学模拟、主成分分析和药物概率分析等计算机模拟评估技术来寻找抗糖尿病抑制剂。二肽基肽酶 - Ⅳ(DPP - Ⅳ)是众多参与糖尿病发病机制的分子靶点之一,将衍射酸(DF)对接至该酶的活性位点以评估DF的抑制作用。此外,使用分子动力学模拟和主成分分析来评估对接复合物的稳定性。此外,随后对DF进行药物概率研究。DF的结合亲和力为 - 40.2476千卡/摩尔,与参考化合物( - 43.0908千卡/摩尔)相当。此外,如分子动力学模拟和主成分分析所示,该化合物结构稳定。基于药物概率测试,DF也显示出可成药的特性。本研究结果表明DF可能作为一种潜在的抗糖尿病抑制剂发挥作用;然而,需要更多的体外和体内研究来验证其活性和其他特性。

补充信息

在线版本包含可在10.1007/s40203 - 025 - 00321 - 9获取的补充材料。

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