家畜转录组数据库（HTIRDB）：一个包含来自七种家养食草动物中每一种的105种不同组织的转录图谱的资源。

The HTIRDB: A resource containing a transcriptional atlas for 105 different tissues from each of seven species of domestic herbivore.

作者信息

Ding Luoyang, Wang Yifan, Zhang Linna, Luo Chengfang, Wu Feifan, Huang Yiming, Zhen Yongkang, Chen Ning, Wang Limin, Song Li, Pool Kelsey, Blache Dominique, Maloney Shane K, Liu Dongxu, Yang Zhiquan, Huang Xiaoyan, Li Chuang, Yu Xiang, Zhang Zhenbin, Chen Yifei, Xue Chun, Gu Yalan, Huang Weidong, Yan Lu, Wei Wenjun, Wang Yusu, Zhang Jinying, Zhang Yifan, Sun Yiquan, Dai Rui, Wang Shengbo, Zhao Xinle, Wang Haodong, Zhou Ping, Yang Qing-Yong, Wang Mengzhi

机构信息

Laboratory of Metabolic Manipulation of Herbivorous Animal Nutrition, College of Animal Science and Technology Yangzhou University Yangzhou China.

State Key Laboratory of Sheep Genetic Improvement and Healthy Production Xinjiang Academy of Agricultural Reclamation Sciences Shihezi China.

出版信息

Imeta. 2025 Jan 28;4(1):e267. doi: 10.1002/imt2.267. eCollection 2025 Feb.

DOI:10.1002/imt2.267

PMID:40027488

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11865344/

Abstract

Here, we describe the Herbivore Transcriptome Integrated Resource Database (HTIRDB, https://yanglab.hzau.edu.cn/HTIRDB#/). The HTIRDB comprises the self-generated transcriptomic data from 100 to 105 tissues from two female domestic herbivores from six species (cattle, donkey, goat, horse, rabbit, and sika deer) and two breeds of sheep, and an extra 28,710 related published datasets. The HTIRDB user-friendly interface provides tools and functionalities that facilitate the exploration of gene expression between tissues and species. The tools for comparative transcriptomics can be used to identify housekeeping genes, tissue-specific genes, species-specific genes, and species-conserved genes. To date, the HTIRDB is the most extensive transcriptome data resource for domestic herbivores that is freely available.

摘要

在此，我们介绍食草动物转录组综合资源数据库（HTIRDB，https://yanglab.hzau.edu.cn/HTIRDB#/）。HTIRDB包含来自6个物种（牛、驴、山羊、马、兔和梅花鹿）的两只雌性家养食草动物以及两个绵羊品种的100至105个组织的自生成转录组数据，还有另外28,710个相关的已发表数据集。HTIRDB用户友好的界面提供了便于探索组织间和物种间基因表达的工具和功能。比较转录组学工具可用于识别管家基因、组织特异性基因、物种特异性基因和物种保守基因。迄今为止，HTIRDB是免费提供的最广泛的家养食草动物转录组数据资源。