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通过计算机模拟分子对接和动力学研究评估各种生物活性分子的gp120-CD4结合抑制特性。

Evaluation of various bioactive molecules for their gp120-CD4 binding inhibitory properties by in-silico molecular docking and dynamic studies.

作者信息

Tank Honey, Deshmukh Niketan

机构信息

Department of Biotechnology, L J School of Applied Sciences, L J University, Ahmedabad, Gujarat 382210 India.

出版信息

In Silico Pharmacol. 2025 Mar 6;13(1):38. doi: 10.1007/s40203-025-00327-3. eCollection 2025.

Abstract

Acquired immunodeficiency syndrome (AIDS), caused by the human immunodeficiency virus (HIV), remains a significant global health challenge, affecting over 38.4 million individuals worldwide according to the World Health Organization (WHO). The high mutation rate of HIV complicates the effectiveness of conventional antiviral drugs, necessitating novel therapeutic approaches. A critical step in HIV infection is the interaction between the viral envelope protein gp120 and CD4+ receptors on host cells, making gp120 an attractive therapeutic target. This study aimed to identify potential inhibitors that disrupt the gp120-CD4 interaction through computational methods. Using an integrated approach combining multiple sequence alignment, phylogenetic analysis, structure prediction, ADME analysis, Molecular docking studies and toxicity profiling identified Epigallocatechin gallate (EGCG) as a promising lead inhibitor of the gp120-CD4 interaction, with a binding affinity of - 6.378 kcal/mol. The stability of the gp120-EGCG complex was validated through 100 ns molecular dynamics simulations and free binding energy calculations, where ΔGBind was calculated to be - 69.7 04 ± 37.940 kJ/mol. EGCG demonstrated favourable drug-like properties with no significant toxicity concerns in our computational analysis. These findings provide a foundation for future in vitro and in vivo studies to develop EGCG-based HIV entry inhibitors.

摘要

获得性免疫缺陷综合征(艾滋病)由人类免疫缺陷病毒(HIV)引起,仍然是一项重大的全球健康挑战。据世界卫生组织(WHO)称,全球有超过3840万人受到影响。HIV的高突变率使传统抗病毒药物的有效性变得复杂,因此需要新的治疗方法。HIV感染的关键步骤是病毒包膜蛋白gp120与宿主细胞上的CD4 +受体之间的相互作用,这使得gp120成为一个有吸引力的治疗靶点。本研究旨在通过计算方法鉴定破坏gp120-CD4相互作用的潜在抑制剂。使用多种序列比对、系统发育分析、结构预测、ADME分析、分子对接研究和毒性分析相结合的综合方法,确定表没食子儿茶素没食子酸酯(EGCG)是gp120-CD4相互作用的一种有前景的先导抑制剂,结合亲和力为-6.378千卡/摩尔。通过100纳秒的分子动力学模拟和自由结合能计算验证了gp120-EGCG复合物的稳定性,其中计算出的ΔGBind为-69.704±37.940千焦/摩尔。在我们的计算分析中,EGCG表现出良好的类药物性质,且无明显毒性问题。这些发现为未来开展基于EGCG的HIV进入抑制剂的体外和体内研究奠定了基础。

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