Nouioui Imen, Derr Eveline, Zimmermann Alina, Jando Marlen, Pötter Gabriele, Kirstein Sarah, Neumann-Schaal Meina, Spröer Cathrin, Bunk Boyke, Mast Yvonne
German Collection of Microorganisms and Cell Cultures, Leibniz Institute DSMZ, Inhoffenstraße 7B, 38124 Braunschweig, Germany.
Rhenish Friedrich Wilhelm University of Bonn, Regina-Pacis-Weg 3, 53113 Bonn, Germany.
Int J Syst Evol Microbiol. 2025 Mar;75(3). doi: 10.1099/ijsem.0.006716.
strains DSM 116494 and DSM 116496 were isolated from sediment samples of the River Oker in Braunschweig, Germany, and subjected to a polyphasic taxonomic study and genome mining for specialized secondary metabolites. Phenotypic, genetic and genomic data confirmed the assignment of these strains to the genus. Pairwise 16S rRNA gene sequence similarity values between the strains and validly named species reached 99.5 and 99.7% for strains DSM 116494 and DSM 116496, respectively. Genome-based phylogeny demonstrated that and species were the close relatives to strain DSM 116494, while species was the nearest neighbour to strain DSM 116496. Digital DNA-DNA hybridization and average nucleotide identity comparisons of the genomic sequence of the strains and their close phylogenomic relatives revealed that values were below the determined threshold of 70 and 95-96% for prokaryotic species demarcation, respectively. The strains were distinguished from their close neighbours based on biochemical, chemotaxonomic and enzymatic data. Given these results, the strains merit being affiliated to novel species within the genus , for which the names sp. nov. (=OG2.3=DSM 116494=KCTC 59408) and sp. nov. (=OG3.14=DSM 116496=KCTC 59410) are proposed. Strains DSM 116494 and DSM 116496 harboured several biosynthetic gene clusters encoding potentially novel antimicrobial and anticancer compounds. Crude extracts of strains DSM 116494 and DSM 116496 inhibited the growth of Gram-negative bacteria ( ΔtolC, ) and a multi-drug-resistant Gram-positive, .
菌株DSM 116494和DSM 116496是从德国不伦瑞克奥克河的沉积物样本中分离出来的,并对其进行了多相分类研究和针对特殊次生代谢产物的基因组挖掘。表型、遗传和基因组数据证实了这些菌株归属于该属。菌株DSM 116494和DSM 116496与有效命名物种之间的16S rRNA基因序列两两相似性值分别达到99.5%和99.7%。基于基因组的系统发育分析表明,[具体物种1]和[具体物种2]是菌株DSM 116494的近亲,而[具体物种3]是菌株DSM 116496的最邻近物种。对这些菌株及其近缘基因组亲属的基因组序列进行数字DNA-DNA杂交和平均核苷酸同一性比较,结果显示,对于原核生物物种划分,其值分别低于确定的阈值70%和95 - 96%。根据生化、化学分类和酶学数据,这些菌株与它们的近邻有所区别。鉴于这些结果,这些菌株值得归属于该属内的新物种,为此提出了新物种[新物种1] sp. nov.(=OG2.3 = DSM 116494 = KCTC 59408)和[新物种2] sp. nov.(=OG3.14 = DSM 116496 = KCTC 59410)。菌株DSM 116494和DSM 116496含有几个编码潜在新型抗菌和抗癌化合物的生物合成基因簇。菌株DSM 116494和DSM 116496的粗提物抑制了革兰氏阴性菌(ΔtolC,[具体菌株1])和一种耐多药革兰氏阳性菌[具体菌株2]的生长。