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Simplatab:一种基于放射组学的双参数磁共振成像检测临床显著性前列腺癌的自动化机器学习框架。

Simplatab: An Automated Machine Learning Framework for Radiomics-Based Bi-Parametric MRI Detection of Clinically Significant Prostate Cancer.

作者信息

Zaridis Dimitrios I, Pezoulas Vasileios C, Mylona Eugenia, Kalantzopoulos Charalampos N, Tachos Nikolaos S, Tsiknakis Nikos, Matsopoulos George K, Regge Daniele, Papanikolaou Nikolaos, Tsiknakis Manolis, Marias Kostas, Fotiadis Dimitrios I

机构信息

Biomedical Research Institute, FORTH, GR 45110 Ioannina, Greece.

Unit of Medical Technology Intelligent Information Systems, University of Ioannina, GR 45110 Ioannina, Greece.

出版信息

Bioengineering (Basel). 2025 Feb 26;12(3):242. doi: 10.3390/bioengineering12030242.

Abstract

BACKGROUND

Prostate cancer (PCa) diagnosis using MRI is often challenged by lesion variability.

METHODS

This study introduces Simplatab, an open-source automated machine learning (AutoML) framework designed for, but not limited to, automating the entire machine Learning pipeline to facilitate the detection of clinically significant prostate cancer (csPCa) using radiomics features. Unlike existing AutoML tools such as Auto-WEKA, Auto-Sklearn, ML-Plan, ATM, Google AutoML, and TPOT, Simplatab offers a comprehensive, user-friendly framework that integrates data bias detection, feature selection, model training with hyperparameter optimization, explainable AI (XAI) analysis, and post-training model vulnerabilities detection. Simplatab requires no coding expertise, provides detailed performance reports, and includes robust data bias detection, making it particularly suitable for clinical applications.

RESULTS

Evaluated on a large pan-European cohort of 4816 patients from 12 clinical centers, Simplatab supports multiple machine learning algorithms. The most notable features that differentiate Simplatab include ease of use, a user interface accessible to those with no coding experience, comprehensive reporting, XAI integration, and thorough bias assessment, all provided in a human-understandable format.

CONCLUSIONS

Our findings indicate that Simplatab can significantly enhance the usability, accountability, and explainability of machine learning in clinical settings, thereby increasing trust and accessibility for AI non-experts.

摘要

背景

使用MRI诊断前列腺癌(PCa)常常受到病变变异性的挑战。

方法

本研究介绍了Simplatab,这是一个开源的自动化机器学习(AutoML)框架,专为但不限于自动化整个机器学习流程而设计,以利用放射组学特征促进临床显著前列腺癌(csPCa)的检测。与现有的AutoML工具如Auto-WEKA、Auto-Sklearn、ML-Plan、ATM、谷歌AutoML和TPOT不同,Simplatab提供了一个全面、用户友好的框架,集成了数据偏差检测、特征选择、超参数优化的模型训练、可解释人工智能(XAI)分析以及训练后模型漏洞检测。Simplatab不需要编码专业知识,提供详细的性能报告,并包括强大的数据偏差检测,使其特别适合临床应用。

结果

在来自12个临床中心的4816名患者的大型泛欧队列中进行评估,Simplatab支持多种机器学习算法。使Simplatab与众不同的最显著特征包括易用性、无编码经验者可访问的用户界面、全面的报告、XAI集成以及全面的偏差评估,所有这些都以人类可理解的格式提供。

结论

我们的研究结果表明,Simplatab可以显著提高机器学习在临床环境中的可用性、可问责性和可解释性,从而增加人工智能非专家的信任度和可及性。

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