Ensemble Deep Learning Models for Automated Segmentation of Tumor and Lymph Node Volumes in Head and Neck Cancer Using Pre- and Mid-Treatment MRI: Application of Auto3DSeg and SegResNet.

Automated segmentation of gross tumor volumes (GTVp) and lymph nodes (GTVn) in head and neck cancer using MRI presents a critical challenge with significant potential to enhance radiation oncology workflows. In this study, we developed a deep learning pipeline based on the SegResNet architecture, integrated into the Auto3DSeg framework, to achieve fully-automated segmentation on pre-treatment (pre-RT) and mid-treatment (mid-RT) MRI scans as part of the DLaBella29 team submission to the HNTS-MRG 2024 challenge. For Task 1, we used an ensemble of six SegResNet models with predictions fused via weighted majority voting. The models were pre-trained on both pre-RT and mid-RT image-mask pairs, then fine-tuned on pre-RT data, without any pre-processing. For Task 2, an ensemble of five SegResNet models was employed, with predictions fused using majority voting. Pre-processing for Task 2 involved setting all voxels more than 1 cm from the registered pre-RT masks to background (value 0), followed by applying a bounding box to the image. Post-processing for both tasks included removing tumor predictions smaller than 175-200 mm and node predictions under 50-60 mm. Our models achieved testing DSCagg scores of 0.72 and 0.82 for GTVn and GTVp in Task 1 (pre-RT MRI) and testing DSCagg scores of 0.81 and 0.49 for GTVn and GTVp in Task 2 (mid-RT MRI). This study underscores the feasibility and promise of deep learning-based auto-segmentation for improving clinical workflows in radiation oncology, particularly in adaptive radiotherapy. Future efforts will focus on refining mid-RT segmentation performance and further investigating the clinical implications of automated tumor delineation.