Ferrone F A, Hofrichter J, Eaton W A
J Mol Biol. 1985 Jun 25;183(4):611-31. doi: 10.1016/0022-2836(85)90175-5.
A double nucleation mechanism for the polymerization of sickle hemoglobin is described. The mechanism accounts for all of the major kinetic observations: the appearance of a delay, the high concentration dependence of the delay time, and the stochastic behavior of slowly polymerizing samples in small volumes. The mechanism postulates that there are two pathways for polymer formation: polymerization is initiated by homogeneous nucleation in the solution phase, followed by nucleation of additional polymers on the surface of existing ones. This second pathway is called heterogeneous nucleation. Since the surface of polymers is continuously increasing with time, heterogeneous nucleation provides a mechanism for the extreme autocatalysis that is manifested as an apparent delay in the kinetic progress curves. In this mechanism, each spherulitic domain of polymers is considered to be initiated by a single homogeneous nucleation event. The mechanism explains the irreproducibility of the delay time for single domain formation as arising from stochastic fluctuations in the time at which the homogeneous nucleus for the first polymer is formed. Integration of the linearized rate equations that describe this model results in a simple kinetic form: A[cosh(Bt)-1] (Bishop & Ferrone, 1984). In the accompanying paper (Ferrone et al., 1985) it was shown that the initial 10 to 15% of progress curves, with delay times varying from a few milliseconds to over 10(5) seconds, is well fit by this equation. In this paper, we present an approximate statistical thermodynamic treatment of the equilibrium nucleation processes that shows how the nucleus sizes and nucleation equilibrium constants depend on monomer concentration. The equilibrium model results in expressions for B and B2A as a function of monomer concentration in terms of five adjustable parameters: the bimolecular addition rate of a monomer to the growing aggregate, the fraction of polymerized monomers that serve as heterogeneous nucleation sites, the free energy of intermolecular bonding within the polymer, and two parameters that describe the free energy change as a function of size for the bonding of the heterogeneous nucleus to a polymer surface. This model provides an excellent fit to the data for B and B2A as a function of concentration using physically reasonable parameters. The model also correctly predicts the time regime in which stochastic behavior is observed for polymerization in small volumes.
描述了一种镰状血红蛋白聚合的双成核机制。该机制解释了所有主要的动力学观察结果:延迟的出现、延迟时间对高浓度的依赖性以及小体积中缓慢聚合样品的随机行为。该机制假定聚合物形成有两条途径:聚合由溶液相中的均相成核引发,随后在现有聚合物表面形成额外聚合物的成核。第二条途径称为异相成核。由于聚合物表面随时间不断增加,异相成核提供了一种极端自催化的机制,表现为动力学进展曲线中的明显延迟。在该机制中,聚合物的每个球晶域被认为由单个均相成核事件引发。该机制解释了单域形成延迟时间的不可重复性是由于第一个聚合物的均相核形成时间的随机波动。对描述该模型的线性化速率方程进行积分得到一种简单的动力学形式:A[cosh(Bt)-1](毕晓普和费罗内,1984年)。在随附的论文(费罗内等人,1985年)中表明,延迟时间从几毫秒到超过10^5秒不等的初始10%至15%的进展曲线,能很好地用该方程拟合。在本文中,我们对平衡成核过程进行了近似统计热力学处理,展示了核尺寸和成核平衡常数如何依赖于单体浓度。平衡模型根据五个可调参数得出了B和B2A作为单体浓度函数的表达式:单体添加到生长聚集体的双分子速率、作为异相成核位点的聚合单体分数、聚合物内分子间键合的自由能,以及描述异相核与聚合物表面键合时自由能随尺寸变化的两个参数。该模型使用物理上合理的参数对B和B2A作为浓度函数的数据提供了极好的拟合。该模型还正确地预测了小体积聚合中观察到随机行为的时间范围。