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Ultra-sensitive detection of transposon insertions across multiple families by transposable element display sequencing.通过转座元件展示测序对多个家族中转座子插入进行超灵敏检测。
Genome Biol. 2025 Mar 6;26(1):48. doi: 10.1186/s13059-025-03512-x.
3
Transposon proliferation drives genome architecture and regulatory evolution in wild and domesticated peppers.转座子增殖推动野生和驯化辣椒的基因组结构及调控进化。
Nat Plants. 2025 Feb;11(2):359-375. doi: 10.1038/s41477-025-01905-1. Epub 2025 Jan 28.
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Alternative silencing states of transposable elements in Arabidopsis associated with H3K27me3.拟南芥中转座元件与H3K27me3相关的不同沉默状态。
Genome Biol. 2025 Jan 20;26(1):11. doi: 10.1186/s13059-024-03466-6.
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The role of mobile DNA elements in the dynamics of plant genome plasticity.移动DNA元件在植物基因组可塑性动态变化中的作用。
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Deciphering recent transposition patterns in plants through comparison of 811 genome assemblies.通过比较811个基因组组装来解读植物近期的转座模式。
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Centrophilic retrotransposon integration via CENH3 chromatin in Arabidopsis.拟南芥中通过CENH3染色质进行的着丝粒嗜性逆转座子整合
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Allotetraploid nature of a wild potato species, Solanum stoloniferum Schlechtd. et Bché., as revealed by whole-genome sequencing.全基因组测序揭示野生马铃薯物种匍枝马铃薯(Solanum stoloniferum Schlechtd. et Bché.)的异源四倍体性质。
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A transposon DNA/hAT-Ac insertion promotes the formation of yellow tepals in lotus (Nelumbo).转座子DNA/hAT-Ac插入促进莲花(Nelumbo)黄色花被片的形成。
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The complete genome assembly of Nicotiana benthamiana reveals the genetic and epigenetic landscape of centromeres.本氏烟草的全基因组组装揭示了着丝粒的遗传和表观遗传景观。
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了解转座子在驱动多倍体植物基因组变异和进化中的调控活动。

Understanding the Regulation Activities of Transposons in Driving the Variation and Evolution of Polyploid Plant Genome.

作者信息

Xiao Yafang, Wang Jianbo

机构信息

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

School of Life Sciences, Guizhou Normal University, Guiyang 550025, China.

出版信息

Plants (Basel). 2025 Apr 8;14(8):1160. doi: 10.3390/plants14081160.

DOI:10.3390/plants14081160
PMID:40284048
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12030055/
Abstract

Transposon is the main component of the eukaryotic genome, and more and more plant genome data show that transposons are diverse in regulating genome structure, variation, function and evolution, with different transposition mechanisms in the genome. Hybridization and polyploidy play an important role in promoting plant speciation and evolution, and recent studies have shown that polyploidy is usually accompanied by the expansion of transposons, which affect the genome size and structure of polyploid plants. Transposons can insert into genes and intergenic regions, resulting in great differences in the overall genome structure of closely related plant species, and it can also capture gene segments in the genome to increase the copy number of genes. In addition, transposons influence the epigenetic modification state of the genome and regulate the expression of the gene, while plant phenotype, biological and abiotic stress response are also regulated by transposons. Overall, transposons play an important role in the plant genome, especially polyploid plant genome, adaptation and evolution.

摘要

转座子是真核生物基因组的主要组成部分,越来越多的植物基因组数据表明,转座子在调节基因组结构、变异、功能和进化方面具有多样性,在基因组中具有不同的转座机制。杂交和多倍体在促进植物物种形成和进化中起重要作用,最近的研究表明,多倍体通常伴随着转座子的扩张,这影响了多倍体植物的基因组大小和结构。转座子可插入基因和基因间区域,导致亲缘关系密切的植物物种在整体基因组结构上存在巨大差异,它还能在基因组中捕获基因片段以增加基因拷贝数。此外,转座子影响基因组的表观遗传修饰状态并调节基因表达,而植物表型、生物和非生物胁迫响应也受转座子调控。总体而言,转座子在植物基因组尤其是多倍体植物基因组、适应和进化中发挥着重要作用。