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基于卡尔曼滤波器的新冠疫情后时代监测与预测流行病学模型

Kalman Filter-Based Epidemiological Model for Post-COVID-19 Era Surveillance and Prediction.

作者信息

Shi Yuanyou, Zhu Xinhang, Zhu Xinhe, Cheng Baiqi, Zhong Yongmin

机构信息

School of Engineering, RMIT University, Melbourne, VIC 3000, Australia.

出版信息

Sensors (Basel). 2025 Apr 16;25(8):2507. doi: 10.3390/s25082507.

DOI:10.3390/s25082507
PMID:40285197
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12031141/
Abstract

In the post-COVID-19 era, the dynamic spread of COVID-19 poses new challenges to epidemiological modelling, particularly due to the absence of large-scale screening and the growing complexity introduced by immune failure and reinfections. This paper proposes an AEIHD (antibody-acquired, exposed, infected, hospitalised, and deceased) model to analyse and predict COVID-19 transmission dynamics in the post-COVID-19 era. This model removes the susceptible compartment and combines the recovered and vaccinated compartments into an "antibody-acquired" compartment. It also introduces a new hospitalised compartment to monitor severe cases. The model incorporates an antibody-acquired infection rate to account for immune failure. The Extended Kalman Filter based on the AEIHD model is proposed for real-time state and parameter estimation, overcoming the limitations of fixed-parameter approaches and enhancing adaptability to nonlinear dynamics. Simulation studies based on reported data from Australia validate the AEIHD model, demonstrating its capability to accurately capture COVID-19 transmission dynamics with limited statistical information. The proposed approach addresses the key limitations of traditional SIR and SEIR models by integrating hospitalisation data and time-varying parameters, offering a robust framework for monitoring and predicting epidemic behaviours in the post-COVID-19 era. It also provides a valuable tool for public health decision-making and resource allocation to handle rapidly evolving epidemiology.

摘要

在新冠疫情后时代,新冠病毒的动态传播给流行病学建模带来了新挑战,尤其是因为缺乏大规模筛查以及免疫失效和再次感染所带来的日益增加的复杂性。本文提出了一种AEIHD(抗体获得、暴露、感染、住院和死亡)模型,以分析和预测新冠疫情后时代的新冠病毒传播动态。该模型去除了易感人群 compartment,并将康复人群和接种疫苗人群合并为一个“抗体获得”人群 compartment。它还引入了一个新的住院人群 compartment 来监测重症病例。该模型纳入了抗体获得感染率以考虑免疫失效情况。提出了基于AEIHD模型的扩展卡尔曼滤波器用于实时状态和参数估计,克服了固定参数方法的局限性并增强了对非线性动态的适应性。基于澳大利亚报告数据的模拟研究验证了AEIHD模型,证明了其在有限统计信息下准确捕捉新冠病毒传播动态的能力。所提出的方法通过整合住院数据和时变参数解决了传统SIR和SEIR模型的关键局限性,为监测和预测新冠疫情后时代的流行行为提供了一个强大的框架。它还为公共卫生决策和资源分配提供了一个有价值的工具,以应对快速演变的流行病学情况。

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本文引用的文献

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Bayesian Noise Modelling for State Estimation of the Spread of COVID-19 in Saudi Arabia with Extended Kalman Filters.贝叶斯噪声建模在利用扩展卡尔曼滤波器对沙特阿拉伯 COVID-19 传播状态估计中的应用。
Sensors (Basel). 2023 May 13;23(10):4734. doi: 10.3390/s23104734.
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Global prevalence of coronavirus disease 2019 reinfection: a systematic review and meta-analysis.全球 2019 冠状病毒病再感染的流行率:系统评价和荟萃分析。
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新冠疫情中的信息源、传播与预测:应对下一次卫生紧急事件的经验教训
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