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用于斑马鱼胚胎行为测试的开源软件利用

Open-source software utilization for zebrafish embryos behavior test.

作者信息

Ranasinghe Thilini, Cha Seon-Heui

机构信息

Department of Marine Bio and Medical Sciences, Hanseo University, Seosan 31962, Republic of Korea.

Department of Marine Bio and Medical Sciences, Hanseo University, Seosan 31962, Republic of Korea; Department of AquaLife Medicine, Hanseo University, Seosan 31962, Republic of Korea; Institute for International Fisheries Science, Hanseo University, Seosan 31962, Republic of Korea.

出版信息

Mol Cells. 2025 Jun;48(6):100221. doi: 10.1016/j.mocell.2025.100221. Epub 2025 Apr 25.

Abstract

This work described simple methods for measuring locomotive activity using open-source software, ImageJ1.54fFiji, and VirtualDub2. The significance of animal behavior is a mirror of brain activity, which can give information implicated with neurological diseases. Commercial behavioral analysis software frequently needs expertise and expenses high costs due to equip a specific instrument to use of software, thereby encouraging a trend toward open-source alternatives that are both accessible and effective. Here, we explained how to convert video format, measure movement, and produce useful locomotive parameters to aid in the assessment of zebrafish embryos. This method could be easily translated for use in other model systems. This methodology seeks to streamline behavioral quantification in research contexts, encouraging broader research aspects.

摘要

这项工作描述了使用开源软件ImageJ1.54fFiji和VirtualDub2测量运动活性的简单方法。动物行为的意义是大脑活动的一面镜子,它可以提供与神经疾病相关的信息。商业行为分析软件由于需要配备特定仪器才能使用,经常需要专业知识且成本高昂,因此促使人们倾向于使用既容易获得又有效的开源替代品。在此,我们解释了如何转换视频格式、测量运动以及生成有用的运动参数,以辅助斑马鱼胚胎的评估。这种方法可以很容易地转换用于其他模型系统。该方法旨在简化研究环境中的行为量化,促进更广泛的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78b9/12140941/146b29fac7ee/gr1.jpg

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