• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

首个针对编码丙酮酸磷酸二激酶的噬菌体的分离、完整表征及系统地理学研究,该噬菌体代表一个新的病毒家族。

Isolation, complete characterization and phylogeography of the first bacteriophage against , which encodes a pyruvate phosphate dikinase and represents a novel viral family.

作者信息

Chen Xin, Liu Ruize, Wang Wei, Liu Yundan, Sun Jianhua, Shao Hongbing, McMinn Andrew, Wang Min, Liang Yantao

机构信息

College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, MOE Key Laboratory of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, PR China.

Department of Intensive Care Unit, Qingdao Hospital, University of Health and Rehabilitation Sciences (Qingdao Municipal Hospital), Qingdao, PR China.

出版信息

Microb Genom. 2025 Apr;11(4). doi: 10.1099/mgen.0.001403.

DOI:10.1099/mgen.0.001403
PMID:40294083
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12038007/
Abstract

are widely distributed in aquatic environments and are major pathogens commonly found in aquaculture environments, playing a significant role in human production activities and maintaining ecological stability. Here, a novel phage, vB_VneS_J26, which infects , was isolated from coastal seawater in Qingdao, China. Transmission electron microscopy revealed that vB_VneS_J26 exhibits siphovirus morphotype, with a linear double-stranded DNA genome of 82,477 bp in length and G+C content of 45.11 mol%, encoding 122 putative ORFs. Three auxiliary metabolic genes related to carbon metabolism and host cell redox processes were identified, including a pyruvate phosphate dikinase, which catalyses the reversible conversion between phosphoenolpyruvate and pyruvate and is rarely detected in viruses. Whole-genome phylogenetic and comparative genomic analyses suggested that vB_VneS_J26 represents a potential novel viral family, comprising six isolated vibriophages, proposed as . Phylogeographic analysis indicated that is primarily distributed in epipelagic and mesopelagic zones of the Arctic and temperate tropical oceans.

摘要

它们广泛分布于水生环境中,是水产养殖环境中常见的主要病原体,在人类生产活动和维持生态稳定方面发挥着重要作用。在此,从中国青岛的沿海海水中分离出一种新型噬菌体vB_VneS_J26,它可感染[此处原文缺失被感染对象]。透射电子显微镜显示,vB_VneS_J26呈现出肌尾噬菌体形态类型,其线性双链DNA基因组长度为82477 bp,G+C含量为45.11 mol%,编码122个推定的开放阅读框。鉴定出了三个与碳代谢和宿主细胞氧化还原过程相关的辅助代谢基因,包括一种磷酸丙酮酸双激酶,它催化磷酸烯醇丙酮酸和丙酮酸之间的可逆转化,在病毒中很少被检测到。全基因组系统发育和比较基因组分析表明,vB_VneS_J26代表一个潜在的新型病毒家族,包含六个分离的弧菌噬菌体,被提议命名为[此处原文缺失提议的名称]。系统地理分析表明,[此处原文缺失相关对象]主要分布在北极和温带热带海洋的上层和中层带。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/023e94e9976f/mgen-11-01403-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/ca1a296966b7/mgen-11-01403-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/d3be6f21bd5b/mgen-11-01403-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/8d25d8d00f9b/mgen-11-01403-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/a330a27a066f/mgen-11-01403-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/4fea1ef91691/mgen-11-01403-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/6f12a380517e/mgen-11-01403-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/023e94e9976f/mgen-11-01403-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/ca1a296966b7/mgen-11-01403-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/d3be6f21bd5b/mgen-11-01403-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/8d25d8d00f9b/mgen-11-01403-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/a330a27a066f/mgen-11-01403-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/4fea1ef91691/mgen-11-01403-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/6f12a380517e/mgen-11-01403-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7f6/12038007/023e94e9976f/mgen-11-01403-g007.jpg

相似文献

1
Isolation, complete characterization and phylogeography of the first bacteriophage against , which encodes a pyruvate phosphate dikinase and represents a novel viral family.首个针对编码丙酮酸磷酸二激酶的噬菌体的分离、完整表征及系统地理学研究,该噬菌体代表一个新的病毒家族。
Microb Genom. 2025 Apr;11(4). doi: 10.1099/mgen.0.001403.
2
Characterization and Genomic Analysis of a Lytic Vibriophage vB_VneS_S3 of Infecting Vibrio neocaledonicus.一株感染新喀里多尼亚弧菌的裂解性弧菌噬菌体vB_VneS_S3的特性分析与基因组分析
Curr Microbiol. 2025 Apr 19;82(6):251. doi: 10.1007/s00284-025-04239-5.
3
Stumbling across the Same Phage: Comparative Genomics of Widespread Temperate Phages Infecting the Fish Pathogen Vibrio anguillarum.偶然发现相同噬菌体:广泛感染鱼类病原体鳗弧菌的温和噬菌体的比较基因组学。
Viruses. 2017 May 20;9(5):122. doi: 10.3390/v9050122.
4
Characterization and Genome Analysis of a Novel Alteromonas Phage JH01 Isolated from the Qingdao Coast of China.一株新型海杆菌噬菌体 JH01 的特性分析及其基因组研究
Curr Microbiol. 2019 Nov;76(11):1256-1263. doi: 10.1007/s00284-019-01751-3. Epub 2019 Aug 1.
5
A novel flavobacterial phage abundant during green tide, representing a new viral family, .一种在绿潮期间丰富的新型黄杆菌噬菌体,代表了一个新的病毒科。
Appl Environ Microbiol. 2024 Jul 24;90(7):e0036724. doi: 10.1128/aem.00367-24. Epub 2024 Jul 2.
6
Complete genomic sequence of bacteriophage P23: a novel Vibrio phage isolated from the Yellow Sea, China.噬菌体P23的全基因组序列:一种从中国黄海分离出的新型弧菌噬菌体。
Virus Genes. 2019 Dec;55(6):834-842. doi: 10.1007/s11262-019-01699-3. Epub 2019 Aug 16.
7
Vibrio cyclitrophicus phage encoding gene transfer agent fragment, representing a novel viral family.环极生丝菌噬菌体编码基因转导因子片段,代表一种新的病毒家族。
Virus Res. 2024 Jan 2;339:199270. doi: 10.1016/j.virusres.2023.199270. Epub 2023 Nov 18.
8
Characterization and Genomic Analysis of ValSw3-3, a New Bacteriophage Infecting Vibrio alginolyticus. characterization and genomic analysis of valsw3-3, a new bacteriophage infecting vibrio alginolyticus.
J Virol. 2020 May 4;94(10). doi: 10.1128/JVI.00066-20.
9
Isolation and characterization of Vibrio parahaemolyticus bacteriophage vB_VpaS_PG07.副溶血弧菌噬菌体 vB_VpaS_PG07 的分离与鉴定。
Virus Res. 2020 Sep;286:198080. doi: 10.1016/j.virusres.2020.198080. Epub 2020 Jun 29.
10
Complete genome sequence of marine bacterium Pseudoalteromonas phenolica bacteriophage TW1.海洋细菌黄杆菌噬菌体 TW1 的全基因组序列
Arch Virol. 2014 Jan;159(1):159-62. doi: 10.1007/s00705-013-1776-6. Epub 2013 Jul 13.

本文引用的文献

1
Accurate structure prediction of biomolecular interactions with AlphaFold 3.利用 AlphaFold 3 进行生物分子相互作用的精确结构预测。
Nature. 2024 Jun;630(8016):493-500. doi: 10.1038/s41586-024-07487-w. Epub 2024 May 8.
2
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool.交互式生命树 (iTOL) v6:系统发育树显示和注释工具的最新更新。
Nucleic Acids Res. 2024 Jul 5;52(W1):W78-W82. doi: 10.1093/nar/gkae268.
3
BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale.
BigSeqKit:一个用于大规模处理 FASTA 和 FASTQ 文件的并行大数据工具包。
Gigascience. 2022 Dec 28;12. doi: 10.1093/gigascience/giad062. Epub 2023 Jul 31.
4
Protocol for optimizing production and quality control of infective EcoHIV virions.优化感染性 EcoHIV 病毒粒子生产和质量控制的方案。
STAR Protoc. 2023 Sep 15;4(3):102368. doi: 10.1016/j.xpro.2023.102368. Epub 2023 Jun 19.
5
Phage Encoding an Antibiotics Resistance Gene Represents a Novel Caudoviral Family.噬菌体编码抗生素耐药基因代表了一种新的尾病毒科。
Microbiol Spectr. 2023 Aug 17;11(4):e0533522. doi: 10.1128/spectrum.05335-22. Epub 2023 Jun 5.
6
Esters of Quinoxaline-7-Carboxylate 1,4-di--Oxide as Potential Inhibitors of Glycolytic Enzymes of Approach.喹喔啉-7-羧酸1,4-二氧化物酯作为糖酵解酶潜在抑制剂的研究方法。
Curr Comput Aided Drug Des. 2024;20(2):155-169. doi: 10.2174/1573409919666230417135204.
7
Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny.肌肉 5:高精度比对集合可实现序列同源性和系统发育的无偏评估。
Nat Commun. 2022 Nov 15;13(1):6968. doi: 10.1038/s41467-022-34630-w.
8
Search and sequence analysis tools services from EMBL-EBI in 2022.2022 年 EMBL-EBI 的搜索和序列分析工具服务。
Nucleic Acids Res. 2022 Jul 5;50(W1):W276-W279. doi: 10.1093/nar/gkac240.
9
Novel Viral Communities Potentially Assisting in Carbon, Nitrogen, and Sulfur Metabolism in the Upper Slope Sediments of Mariana Trench.马里亚纳海沟上层沉积物中可能有助于碳、氮和硫代谢的新型病毒群落。
mSystems. 2022 Feb 22;7(1):e0135821. doi: 10.1128/msystems.01358-21. Epub 2022 Jan 4.
10
The Rsm (Csr) post-transcriptional regulatory pathway coordinately controls multiple CRISPR-Cas immune systems.Rsm(Csr)转录后调控途径协调控制多个 CRISPR-Cas 免疫系统。
Nucleic Acids Res. 2021 Sep 20;49(16):9508-9525. doi: 10.1093/nar/gkab704.