Parthiban Anaikutti, Sachithanandam Veeraragavan, Lalitha Perumal, Adhikari Priyanka, Prakash Santhiyagu, Ramasubburayan Ramasamy, Dhillon Deepika, Muthukumaran Jayaraman, Vinithkumar Nambali Valsalan, Sridhar Rengurajan, Purvaja Ramachandran
National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Anna University Campus, Chennai, Tamil Nadu, 600 025, India.
Medical Chemistry Lab, Department of Pathology, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and Technical Sciences, Chennai, Tamil Nadu, India.
J Comput Aided Mol Des. 2025 Apr 29;39(1):22. doi: 10.1007/s10822-025-00600-9.
Excoecaria agallocha L, a mangrove plant widely used in traditional medication in India, was the focus of this study to evaluate its antioxidant, anticancer, structural, dynamic, and biodegradability properties of its bioactive compound, ursolic acid. This study, a sample (E. agallocha) collected from the tropical Islands ecosystem of South Andaman, India, represents the first report identifying Ursolic acid from the methanolic extract. The structure elucidation of the isolated bioactive compound was characterized using FT-IR, H(Proton), C(Carbon) NMR spectroscopy, and HRMS. The antioxidant and anticancer activities were evaluated using the DPPH and MTT assay methods, respectively. The methanolic extract of E. agallocha demonstratedsignificantin vitro anticancer activity against Cervical (HeLa) and Breast (MDA-MB231) human cancer cell lines, with notable IC values of 19.50 ± 0.41 µg/mL and 20.67 ± 0.14 µg/mL, respectively. It is highlighted that the ursolic acid's anticancer activity was more potent, with IC values of 3.5714 µg/mL against MDA-MB231 cells compared to the methanolic extract. The methanolic extract's antioxidant properties with IC values of 90.37 ± 0.41 and purified ursolic acid molecule exhibited promising IC values of 7.59 ± 0.41 µg/mL. Gas Chromatography-Mass Spectrometry analysis of the methanolic extracts of E. agallocha revealed the presence of numerous pharmacologically bioactive compounds. In the in silico studies, molecular docking of two ligands, Ursolic acid and Obatoclax, with the Bcl-B protein demonstrated notable binding affinities, with ΔG values of -5.8 kcal/mol and - 6.6 kcal/mol, respectively. Ursolic acid's binding affinity is comparable to Obatoclax's, highlighting its potential as a viable anticancerous candidate for targeting Bcl-B protein. Assess the ligands' impact on the protein's stability, flexibility, compactness, folding properties, and solvent accessibility, MD simulations were performed. The MD simulation results revealed that the ligand-bound Bcl-B complexes exhibited significant structural stability, with moderate ligand-induced conformational changes observed in the target protein. Further, BIOWIN™ models indicated that the identified Ursolic Acid is biodegradable in an aerobic environment, underscoring its environmental compatibility. Deciphering the bioactivities of ursolic acid could uncover new therapeutic agents and enhance our understanding of its biodegradable environmental compatibility, revealing the source of already documented pharmacological compounds.
海漆(Excoecaria agallocha L)是一种在印度传统药物中广泛使用的红树林植物,本研究聚焦于评估其生物活性化合物熊果酸的抗氧化、抗癌、结构、动力学和生物降解性。本研究从印度南安达曼的热带岛屿生态系统采集了一个样本(海漆),这是首次从甲醇提取物中鉴定出熊果酸的报告。使用傅里叶变换红外光谱(FT-IR)、氢(质子)核磁共振(H NMR)、碳核磁共振(C NMR)光谱和高分辨质谱(HRMS)对分离出的生物活性化合物进行结构解析。分别使用二苯基苦味酰基自由基(DPPH)法和3-(4,5-二甲基噻唑-2)-2,5-二苯基四氮唑溴盐(MTT)法评估抗氧化和抗癌活性。海漆的甲醇提取物对人宫颈癌细胞系(HeLa)和乳腺癌细胞系(MDA-MB231)表现出显著的体外抗癌活性,其半数抑制浓度(IC)值分别为19.50±0.41μg/mL和20.67±0.14μg/mL。值得注意的是,熊果酸的抗癌活性更强,与甲醇提取物相比,其对MDA-MB231细胞的IC值为3.5714μg/mL。甲醇提取物的抗氧化性能IC值为90.37±0.41,纯化的熊果酸分子表现出有前景的IC值,为7.59±0.41μg/mL。对海漆甲醇提取物的气相色谱-质谱分析表明存在多种具有药理活性的生物化合物。在计算机模拟研究中,两种配体熊果酸和 obatoclax 与Bcl-B蛋白的分子对接显示出显著的结合亲和力,其自由能变化(ΔG)值分别为-5.8 kcal/mol和-6.6 kcal/mol。熊果酸的结合亲和力与obatoclax相当,突出了其作为靶向Bcl-B蛋白的可行抗癌候选物的潜力。为评估配体对蛋白质稳定性、灵活性、紧密性、折叠性质和溶剂可及性的影响,进行了分子动力学(MD)模拟。MD模拟结果表明,配体结合的Bcl-B复合物表现出显著的结构稳定性,在靶蛋白中观察到适度的配体诱导构象变化。此外,BIOWIN™模型表明,鉴定出的熊果酸在有氧环境中可生物降解,强调了其环境相容性。解读熊果酸的生物活性可能会发现新的治疗药物,并增进我们对其生物可降解环境相容性的理解,揭示已记录的药理化合物的来源。