Chen Wei, Choi Junhong
Department of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Developmental Biology Program, Memorial Sloan Kettering Cancer Center, NY 10065, USA.
Trends Genet. 2025 Aug;41(8):647-659. doi: 10.1016/j.tig.2025.04.004. Epub 2025 May 6.
Advances in precise genome editing are enabling genomic recordings of cellular events. Since the initial demonstration of CRISPR-based genome editing, the field of genomic recording has witnessed key strides in lineage recording, where clonal lineage relationships among cells are indirectly recorded as synthetic mutations. However, methods for directly recording and reconstructing past cellular events are still limited, and their potential for revealing new insights into cell fate decisions has yet to be realized. The field needs new sensing modules and genetic circuit architectures that faithfully encode past cellular states into genomic DNA recordings to achieve such goals. Here we review recently developed strategies to construct diverse sensors and explore how emerging synthetic biology tools may help to build molecular circuits for genomic recording of diverse cellular events.
精确基因组编辑技术的进步使得对细胞事件进行基因组记录成为可能。自基于CRISPR的基因组编辑技术首次得到证明以来,基因组记录领域在谱系记录方面取得了关键进展,其中细胞间的克隆谱系关系被间接记录为合成突变。然而,直接记录和重建过去细胞事件的方法仍然有限,其在揭示细胞命运决定新见解方面的潜力尚未得到实现。该领域需要新的传感模块和遗传电路架构,将过去的细胞状态忠实地编码到基因组DNA记录中,以实现这些目标。在这里,我们回顾了最近开发的构建各种传感器的策略,并探讨新兴的合成生物学工具如何有助于构建用于记录各种细胞事件的基因组的分子电路。