Cheng George, Schnürer Anna, Westerholm Maria
Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Int J Syst Evol Microbiol. 2025 May;75(5). doi: 10.1099/ijsem.0.006773.
A strictly anaerobic bacterial strain, designated as AMB_02, was isolated from a propionate enrichment culture obtained from a high-ammonia biogas digester. The cells were anaerobic and coccoid (0.5 µm), often appearing as diplococci or in a short chain of three to four cells. Growth was observed between 20 and 45 °C (optimum at 37-39 °C), with an initial pH of 6.5-9.0 (optimum pH 8.0-8.5), and the species tolerated up to 0.8 M NHCl and 0.5 M NaCl. The major cellular fatty acids were C (31.6%), C (14.6%) and C (13.3%). AMB_02 grew with formate, carbohydrates and aa, including asparagine, histidine, tryptone and tryptophan. Acetate was the major product formed. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain AMB_02 was most closely related to the species (92.5%). The genome of strain AMB_02 was 2.5 Mb in length with a G+C content of 34.8 mol%, and 2,354 protein-coding genes were predicted. Furthermore, genes coding for the reductive glycine pathway potentially used for formate metabolism were identified. Comparative genomic analysis of AMB_02 revealed the closest similarity to [21.2% digital DNA-DNA hybridization (dDDH) and 77.4% average nt identity (ANI)] and to (4.4% dDDH and 76.9% ANI). Based on the phenotypic characteristics and phylogenetic analyses, AMB_02 is regarded as a novel genus, , within the family for which the species name is proposed. The type strain is AMB_02=DSM 110248=JCM 39108.
从一个来自高氨沼气消化池的丙酸盐富集培养物中分离出了一株严格厌氧的细菌菌株,命名为AMB_02。细胞为厌氧球菌(0.5 µm),常呈双球菌或三到四个细胞的短链状。在20至45°C(最适温度为37 - 39°C)之间观察到生长,初始pH值为6.5 - 9.0(最适pH值8.0 - 8.5),该菌株能耐受高达0.8 M的NHCl和0.5 M的NaCl。主要的细胞脂肪酸为C(31.6%)、C(14.6%)和C(13.3%)。AMB_02能利用甲酸盐、碳水化合物和氨基酸生长,包括天冬酰胺、组氨酸、胰蛋白胨和色氨酸。乙酸盐是形成的主要产物。基于16S rRNA基因序列的系统发育分析表明,菌株AMB_02与该物种关系最为密切(92.5%)。菌株AMB_02的基因组长度为2.5 Mb,G + C含量为34.8 mol%,预测有2354个蛋白质编码基因。此外,还鉴定出了可能用于甲酸盐代谢的还原甘氨酸途径的编码基因。AMB_02的比较基因组分析显示与[21.2%的数字DNA - DNA杂交(dDDH)和77.4%的平均核苷酸同一性(ANI)]以及与(4.4%的dDDH和76.9%的ANI)最为相似。基于表型特征和系统发育分析,AMB_02被认为是一个新属,在科内,为此提出了物种名称。模式菌株为AMB_02 = DSM 110248 = JCM 39108。