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PCNA 激活的 FAN1 核酸酶在 DNA 修复中的结构和分子基础

Structural and molecular basis of PCNA-activated FAN1 nuclease function in DNA repair.

作者信息

Li F, Phadte A S, Bhatia M, Barndt S, Monte Carlo Iii A R, Hou C-F D, Yang R, Strock S, Pluciennik A

机构信息

Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, PA, USA.

Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

出版信息

Nat Commun. 2025 May 14;16(1):4411. doi: 10.1038/s41467-025-59323-y.

DOI:10.1038/s41467-025-59323-y
PMID:40368897
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12078661/
Abstract

FAN1 is a DNA dependent nuclease whose proper function is essential for maintaining human health. For example, a genetic variant in FAN1, Arg507 to His hastens onset of Huntington's disease, a repeat expansion disorder for which there is no cure. How the Arg507His mutation affects FAN1 structure and enzymatic function is unknown. Using cryo-EM and biochemistry, we have discovered that FAN1 arginine 507 is critical for its interaction with PCNA, and mutation of Arg507 to His attenuates assembly of the FAN1-PCNA complex on a disease-relevant extrahelical DNA extrusions formed within DNA repeats. This mutation concomitantly abolishes PCNA-FAN1-dependent cleavage of such extrusions, thus unraveling the molecular basis for a specific mutation in FAN1 that dramatically hastens the onset of Huntington's disease. These results underscore the importance of PCNA to the genome stabilizing function of FAN1.

摘要

FAN1是一种依赖DNA的核酸酶,其正常功能对于维持人类健康至关重要。例如,FAN1中的一种基因变异,即从精氨酸507突变为组氨酸,会加速亨廷顿舞蹈病的发病,这是一种无法治愈的重复序列扩张性疾病。精氨酸507突变为组氨酸的突变如何影响FAN1的结构和酶功能尚不清楚。利用冷冻电镜和生物化学方法,我们发现FAN1的精氨酸507对其与增殖细胞核抗原(PCNA)的相互作用至关重要,并且将精氨酸507突变为组氨酸会减弱FAN1-PCNA复合物在DNA重复序列内形成的与疾病相关的螺旋外DNA突出结构上的组装。这种突变同时消除了PCNA-FAN1依赖的此类突出结构的切割,从而揭示了FAN1中一种特定突变显著加速亨廷顿舞蹈病发病的分子基础。这些结果强调了PCNA对FAN1基因组稳定功能的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/0ad2258d9b36/41467_2025_59323_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/50b474db36c2/41467_2025_59323_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/b88468828acd/41467_2025_59323_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/3eb0acb80a81/41467_2025_59323_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/dcc42f4ac514/41467_2025_59323_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/610a3f261785/41467_2025_59323_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/c6c039c73651/41467_2025_59323_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/0ad2258d9b36/41467_2025_59323_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/50b474db36c2/41467_2025_59323_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/b88468828acd/41467_2025_59323_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/3eb0acb80a81/41467_2025_59323_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/dcc42f4ac514/41467_2025_59323_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/610a3f261785/41467_2025_59323_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/c6c039c73651/41467_2025_59323_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/196b/12078661/0ad2258d9b36/41467_2025_59323_Fig7_HTML.jpg

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本文引用的文献

1
Long somatic DNA-repeat expansion drives neurodegeneration in Huntington's disease.长链体细胞DNA重复序列扩增导致亨廷顿舞蹈症中的神经退行性变。
Cell. 2025 Feb 6;188(3):623-639.e19. doi: 10.1016/j.cell.2024.11.038. Epub 2025 Jan 16.
2
Accurate structure prediction of biomolecular interactions with AlphaFold 3.利用 AlphaFold 3 进行生物分子相互作用的精确结构预测。
Nature. 2024 Jun;630(8016):493-500. doi: 10.1038/s41586-024-07487-w. Epub 2024 May 8.
3
FAN1 removes triplet repeat extrusions via a PCNA- and RFC-dependent mechanism.
FAN1 通过依赖 PCNA 和 RFC 的机制去除三核苷酸重复外溢。
Proc Natl Acad Sci U S A. 2023 Aug 15;120(33):e2302103120. doi: 10.1073/pnas.2302103120. Epub 2023 Aug 7.
4
Mechanism of human Lig1 regulation by PCNA in Okazaki fragment sealing.PCNA 调控人类 Lig1 在 Okazaki 片段封端的作用机制。
Nat Commun. 2022 Dec 20;13(1):7833. doi: 10.1038/s41467-022-35475-z.
5
Exome sequencing of individuals with Huntington's disease implicates FAN1 nuclease activity in slowing CAG expansion and disease onset.亨廷顿病患者外显子组测序提示 FAN1 核酸酶活性可减缓 CAG 扩展和疾病发病。
Nat Neurosci. 2022 Apr;25(4):446-457. doi: 10.1038/s41593-022-01033-5. Epub 2022 Apr 4.
6
FAN1 exo- not endo-nuclease pausing on disease-associated slipped-DNA repeats: A mechanism of repeat instability.FAN1 外切核酸酶在与疾病相关的滑动 DNA 重复序列上的暂停:重复不稳定性的一种机制。
Cell Rep. 2021 Dec 7;37(10):110078. doi: 10.1016/j.celrep.2021.110078.
7
FAN1's protection against CGG repeat expansion requires its nuclease activity and is FANCD2-independent.FAN1 的保护作用依赖于其核酸酶活性,且与 FANCD2 无关。
Nucleic Acids Res. 2021 Nov 18;49(20):11643-11652. doi: 10.1093/nar/gkab899.
8
FAN1 controls mismatch repair complex assembly via MLH1 retention to stabilize CAG repeat expansion in Huntington's disease.FAN1 通过 MLH1 的保留来控制错配修复复合物的组装,以稳定亨廷顿病中的 CAG 重复扩展。
Cell Rep. 2021 Aug 31;36(9):109649. doi: 10.1016/j.celrep.2021.109649.
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DeepEMhancer: a deep learning solution for cryo-EM volume post-processing.DeepEMhancer:一种用于冷冻电镜体积后处理的深度学习解决方案。
Commun Biol. 2021 Jul 15;4(1):874. doi: 10.1038/s42003-021-02399-1.
10
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J Huntingtons Dis. 2021;10(1):95-122. doi: 10.3233/JHD-200448.