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氢化酶[NiFe]辅因子的生物合成与组装:最新进展与展望

Biosynthesis and assembly of hydrogenase [NiFe]-cofactor: recent advances and perspectives.

作者信息

Sawers R Gary, Hardelt Maximilian, Haase Alexander, Lubek Dorothea

机构信息

Institute for Microbiology, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.

出版信息

Metallomics. 2025 Jun 3;17(6). doi: 10.1093/mtomcs/mfaf015.

DOI:10.1093/mtomcs/mfaf015
PMID:40411749
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12134894/
Abstract

The large subunit of all [NiFe]-hydrogenases in bacteria and archaea has a heterobimetallic NiFe(CN)2CO cofactor coordinated by four cysteine residues. The iron ion has two cyanides and a carbon monoxide as diatomic ligands. Six ancillary Hyp (ABCDEF) proteins are necessary for anaerobic synthesis of this cofactor, while under oxic conditions at least one further protein, HypX, is required for CO synthesis. The Fe(CN)2CO moiety of the cofactor is synthesized on a separate HypCD scaffold complex. Nickel is inserted into the apo-large subunit only after Fe(CN)2CO has been introduced. Recent biochemical and structural studies have significantly advanced our understanding of cofactor biosynthesis for these important metalloenzymes. Despite these gains in mechanistic insight, many questions still remain, the most pressing of which is the origin of the CO ligand in anaerobic microorganisms. This minireview provides an overview of the current status of this research field and highlights recent advances and unresolved issues.

摘要

细菌和古菌中所有[NiFe]氢化酶的大亚基都有一个由四个半胱氨酸残基配位的异双金属NiFe(CN)₂CO辅因子。铁离子有两个氰化物和一个一氧化碳作为双原子配体。六种辅助Hyp(ABCDEF)蛋白是该辅因子厌氧合成所必需的,而在有氧条件下,CO合成至少还需要一种蛋白HypX。辅因子的Fe(CN)₂CO部分在一个单独的HypCD支架复合物上合成。只有在引入Fe(CN)₂CO后,镍才会插入脱辅基大亚基中。最近的生化和结构研究极大地推进了我们对这些重要金属酶辅因子生物合成的理解。尽管在机理认识上有这些进展,但仍有许多问题存在,其中最紧迫的是厌氧微生物中CO配体的来源。本综述概述了该研究领域的现状,并突出了最近的进展和未解决的问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f32d/12134894/3df4ce1d1d14/mfaf015fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f32d/12134894/99e24eb3ac14/mfaf015fig1g.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f32d/12134894/59d5af0af3fd/mfaf015fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f32d/12134894/81b514ac4ed5/mfaf015fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f32d/12134894/79a02a61d2c0/mfaf015fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f32d/12134894/3df4ce1d1d14/mfaf015fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f32d/12134894/99e24eb3ac14/mfaf015fig1g.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f32d/12134894/59d5af0af3fd/mfaf015fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f32d/12134894/81b514ac4ed5/mfaf015fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f32d/12134894/79a02a61d2c0/mfaf015fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f32d/12134894/3df4ce1d1d14/mfaf015fig4.jpg

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本文引用的文献

1
ATP-Triggered Fe(CN)CO Synthon Transfer from the Maturase HypCD to the Active Site of Apo-[NiFe]-Hydrogenase.ATP 触发的成熟酶 HypCD 到脱辅基-[NiFe]-氢化酶活性部位的 Fe(CN)CO 前体转移。
J Am Chem Soc. 2024 Nov 13;146(45):30976-30989. doi: 10.1021/jacs.4c09791. Epub 2024 Nov 3.
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Accurate structure prediction of biomolecular interactions with AlphaFold 3.利用 AlphaFold 3 进行生物分子相互作用的精确结构预测。
Nature. 2024 Jun;630(8016):493-500. doi: 10.1038/s41586-024-07487-w. Epub 2024 May 8.
3
Evidence the Isc iron-sulfur cluster biogenesis machinery is the source of iron for [NiFe]-cofactor biosynthesis in Escherichia coli.
证据表明,Isc 铁硫簇生物发生机制是大肠杆菌 [NiFe]-辅因子生物合成的铁源。
Sci Rep. 2024 Feb 6;14(1):3026. doi: 10.1038/s41598-024-53745-2.
4
A redox-active HybG-HypD scaffold complex is required for optimal ATPase activity during [NiFe]-hydrogenase maturation in Escherichia coli.在大肠杆菌中 [NiFe]-氢化酶成熟过程中,需要一个氧化还原活性的 HybG-HypD 支架复合物以实现最佳的 ATP 酶活性。
FEBS Open Bio. 2023 Feb;13(2):341-351. doi: 10.1002/2211-5463.13546. Epub 2023 Jan 20.
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Structure of the membrane-bound formate hydrogenlyase complex from Escherichia coli.大肠杆菌膜结合态甲酸盐氢酶复合物的结构。
Nat Commun. 2022 Sep 14;13(1):5395. doi: 10.1038/s41467-022-32831-x.
6
An in vitro reconstitution system to monitor iron transfer to the active site during the maturation of [NiFe]-hydrogenase.体外重建体系监测[NiFe]-氢化酶成熟过程中铁向活性部位的转移。
J Biol Chem. 2022 Sep;298(9):102291. doi: 10.1016/j.jbc.2022.102291. Epub 2022 Jul 20.
7
Native mass spectrometry identifies the HybG chaperone as carrier of the Fe(CN)CO group during maturation of E. coli [NiFe]-hydrogenase 2.天然质谱分析鉴定出 HybG 伴侣蛋白是大肠杆菌 [NiFe]-氢化酶 2 成熟过程中 Fe(CN)CO 基团的载体。
Sci Rep. 2021 Dec 21;11(1):24362. doi: 10.1038/s41598-021-03900-w.
8
The Classical, Yet Controversial, First Enzyme of Lipid Synthesis: Escherichia coli Acetyl-CoA Carboxylase.经典但颇具争议的脂质合成第一酶:大肠杆菌乙酰辅酶 A 羧化酶。
Microbiol Mol Biol Rev. 2021 Aug 18;85(3):e0003221. doi: 10.1128/MMBR.00032-21. Epub 2021 Jun 16.
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Making iron-sulfur cluster: structure, regulation and evolution of the bacterial ISC system.形成铁硫簇:细菌 ISC 系统的结构、调控与进化。
Adv Microb Physiol. 2020;76:1-39. doi: 10.1016/bs.ampbs.2020.01.001. Epub 2020 Apr 16.
10
Structural Insight into [NiFe] Hydrogenase Maturation by Transient Complexes between Hyp Proteins.瞬态蛋白复合物对[NiFe]氢化酶成熟的结构解析。
Acc Chem Res. 2020 Apr 21;53(4):875-886. doi: 10.1021/acs.accounts.0c00022. Epub 2020 Mar 31.