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从人类粪便中分离出的厌氧细菌新亚种的描述,以及对……的修订描述。

Description of subsp. subsp. nov., an anaerobic bacterium isolated from human faeces, and emended description of .

作者信息

Ricci Liviana, Selma-Royo Marta, Golzato Davide, Servais Charlotte, Nabinejad Amir, Marchi Paolo, Punčochář Michal, Trenti Francesco, Garcia-Aloy Mar, Armanini Federica, Marconi Roberta, Asnicar Francesco, Pinto Federica, Guella Graziano, Tamburini Sabrina, Segata Nicola

机构信息

Department of CIBIO, University of Trento, Trento, Italy.

IEO, European Institute of Oncology IRCCS, Milan, Italy.

出版信息

Int J Syst Evol Microbiol. 2025 May;75(5). doi: 10.1099/ijsem.0.006798.

Abstract

A recent metagenomic survey has revealed an unknown bacterial clade within the species to be significantly more prevalent in non-urbanized populations, compared to urbanized ones. We isolated and characterized a strain of this clade from the stool of a healthy adult volunteer. Strain CMD8551 is strictly anaerobic, appears as long chains of Gram-positive rods and produces acetate in the presence of glucose. The lipidomic profile showed a higher proportion of saturated lipid species amongst the detected phospholipids. The whole genome is 2,320,430 bp long and has a G+C content of 33.7 mol% with 2,239 CDSs. A phylogenetic analysis comparing the sequences of the strain CMD8551 with publicly available reference genomes from the genus revealed that the CMD8551 isolate, together with other isolate genomes, forms a distinct subspecies of and has an average nucleotide identity lower than 94% with respect to the previously described subsp. . Given the phenotypic, chemotaxonomic and phylogenetic characteristics of the newly isolated CMD8551 (=DSM 118469=LMG 33725=CIP 112509) that clearly differ from those of the subsp. type strain RCA14-39, we propose it as the type strain of a novel subspecies of , with the name subsp. subsp. nov.

摘要

最近的一项宏基因组学调查显示,与城市化人群相比,该物种内一个未知的细菌分支在非城市化人群中更为普遍。我们从一名健康成年志愿者的粪便中分离并鉴定了该分支的一个菌株。菌株CMD8551严格厌氧,呈革兰氏阳性杆菌长链状,在有葡萄糖存在的情况下产生乙酸盐。脂质组学分析显示,在检测到的磷脂中,饱和脂质种类的比例更高。全基因组长度为2,320,430 bp,G+C含量为33.7 mol%,有2,239个编码序列。将菌株CMD8551的序列与该属公开可用的参考基因组进行系统发育分析,结果表明,CMD8551分离株与其他分离株基因组一起,形成了该属的一个独特亚种,与先前描述的亚种相比,平均核苷酸同一性低于94%。鉴于新分离的CMD8551(=DSM 118469=LMG 33725=CIP 112509)的表型、化学分类和系统发育特征明显不同于亚种类型菌株RCA14-39,我们提议将其作为该属一个新亚种的模式菌株,命名为亚种nov。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2b4/12125477/1817c0505ffc/ijsem-75-06798-g001.jpg

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