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关于概率网络中期望模块性的精确计算。

On the accurate computation of expected modularity in probabilistic networks.

作者信息

Shen Xin, Magnani Matteo, Rohner Christian, Skerman Fiona

机构信息

InfoLab, Department of Information Technology, Uppsala University, 75105, Uppsala, Sweden.

Department of Mathematics, Uppsala University, 75105, Uppsala, Sweden.

出版信息

Sci Rep. 2025 May 30;15(1):19062. doi: 10.1038/s41598-025-99114-5.

DOI:10.1038/s41598-025-99114-5
PMID:40447791
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12125379/
Abstract

Modularity is one of the most widely used measures for evaluating communities in networks. In probabilistic networks, where the existence of edges is uncertain and uncertainty is represented by probabilities, the expected value of modularity can be used instead. However, efficiently computing expected modularity is challenging. To address this challenge, we propose a novel and efficient technique ([Formula: see text]) for computing the probability distribution of modularity and its expected value. In this paper, we implement and compare our method and various general approaches for expected modularity computation in probabilistic networks. These include: (1) translating probabilistic networks into deterministic ones by removing low-probability edges or treating probabilities as weights, (2) using Monte Carlo sampling to approximate expected modularity, and (3) brute-force computation. We evaluate the accuracy and time efficiency of [Formula: see text] through comprehensive experiments on both real-world and synthetic networks with diverse characteristics. Our results demonstrate that removing low-probability edges or treating probabilities as weights produces inaccurate results, while the convergence of the sampling method varies with the parameters of the network. Brute-force computation, though accurate, is prohibitively slow. In contrast, our method is much faster than brute-force computation, but guarantees an accurate result.

摘要

模块度是评估网络中社区结构最广泛使用的度量之一。在概率网络中,边的存在是不确定的,不确定性由概率表示,此时可以使用模块度的期望值。然而,有效地计算期望模块度具有挑战性。为应对这一挑战,我们提出了一种新颖且高效的技术([公式:见原文])来计算模块度的概率分布及其期望值。在本文中,我们实现并比较了我们的方法以及概率网络中期望模块度计算的各种通用方法。这些方法包括:(1)通过去除低概率边或将概率视为权重将概率网络转换为确定性网络,(2)使用蒙特卡罗采样来近似期望模块度,以及(3)暴力计算。我们通过对具有不同特征的真实世界网络和合成网络进行全面实验,评估了[公式:见原文]的准确性和时间效率。我们的结果表明,去除低概率边或将概率视为权重会产生不准确的结果,而采样方法的收敛性随网络参数而变化。暴力计算虽然准确,但速度极慢。相比之下,我们的方法比暴力计算快得多,同时保证结果准确。

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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afa9/12125379/cdbb0a759ede/41598_2025_99114_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afa9/12125379/1981f83913a7/41598_2025_99114_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afa9/12125379/4d58876dbd63/41598_2025_99114_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afa9/12125379/1dde419996ba/41598_2025_99114_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afa9/12125379/c35e273d08b1/41598_2025_99114_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afa9/12125379/e1148118f003/41598_2025_99114_Fig11_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afa9/12125379/ba6afbf50564/41598_2025_99114_Fig12_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afa9/12125379/3a2c9f930e3a/41598_2025_99114_Fig13_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afa9/12125379/6fa49ba39fef/41598_2025_99114_Fig14_HTML.jpg

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本文引用的文献

1
Unspoken Assumptions in Multi-layer Modularity maximization.多层模块化最大化中的隐性假设。
Sci Rep. 2020 Jul 6;10(1):11053. doi: 10.1038/s41598-020-66956-0.
2
Estimating uncertainty and reliability of social network data using Bayesian inference.使用贝叶斯推断估计社交网络数据的不确定性和可靠性。
R Soc Open Sci. 2015 Sep 16;2(9):150367. doi: 10.1098/rsos.150367. eCollection 2015 Sep.
3
Modularity and community structure in networks.网络中的模块化与群落结构。
Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8577-82. doi: 10.1073/pnas.0601602103. Epub 2006 May 24.
4
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.酿酒酵母中蛋白质复合物的全球格局。
Nature. 2006 Mar 30;440(7084):637-43. doi: 10.1038/nature04670. Epub 2006 Mar 22.
5
Modularity from fluctuations in random graphs and complex networks.随机图和复杂网络波动中的模块化。
Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Aug;70(2 Pt 2):025101. doi: 10.1103/PhysRevE.70.025101. Epub 2004 Aug 19.
6
The structure of scientific collaboration networks.科学合作网络的结构
Proc Natl Acad Sci U S A. 2001 Jan 16;98(2):404-9. doi: 10.1073/pnas.98.2.404. Epub 2001 Jan 9.
7
Emergence of scaling in random networks.随机网络中幂律分布的出现。
Science. 1999 Oct 15;286(5439):509-12. doi: 10.1126/science.286.5439.509.
8
Collective dynamics of 'small-world' networks.“小世界”网络的集体动力学
Nature. 1998 Jun 4;393(6684):440-2. doi: 10.1038/30918.