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基于网络药理学和分子对接技术解析新疆野樱桃李(Prunus divaricata Ledeb)花色苷的抗动脉粥样硬化机制

Unraveling anti-atherosclerosis mechanism of anthocyanins from Xinjiang wild cherry plum (Prunus divaricata Ledeb) via network pharmacology and molecular docking.

作者信息

Li Siyu, He Juan, Hu Huiyi, Wang Guang, Tang Juan, Yao Jun, Shen Jing, Li Xing

机构信息

PuAi Medical School, Shaoyang University, Shaoyang, 422000, China.

Medical College, Hunan University of Medicine, Huaihua, 418000, China.

出版信息

Bioresour Bioprocess. 2025 Jun 6;12(1):53. doi: 10.1186/s40643-025-00900-w.

Abstract

Atherosclerosis is a chronic vascular disease characterized by failure to resolve inflammation and forming plaque within the arterial wall. Atherosclerosis and its related cardiovascular diseases are the major causes of death worldwide. Our previous preliminary study showed that anthocyanin-rich extract (ACNE) from Xinjiang wild cherry plum (Prunus divaricata Ledeb) fruit peels exhibited anti-atherosclerotic effect. However, the potential mechanism of this health-beneficial effect remains unclear. Here, network pharmacology combined with molecular docking was used to tentatively address this issue. The ACNE mainly contains cyanidin, cyanidin 3-glucoside (Cy3Glu), Cyanidin 3-(6''-acetylglucoside) (Cy3AcGlu), cyanidin 3-galactoside (Cy3Gal), cyanidin 3-xyloside (Cy3Xyl), and cyanidin 3-rutinoside (Cy3Rut). Seven key targets, EGFR, VEGFA, HSP90AA1, SRC, HIF1A, CXCR4 and IGF1R were identified from core protein-protein interaction (PPI) network. Anthocyanins interacting on key targets were initially demonstrated by molecular docking, particularly Cy3Rut and Cy3Xyl having highest affinity with most key targets. Biological function analysis suggested that key targets were involved in several biological processes, including positive regulation of cell migration, positive regulation of phosphorylation, inflammatory response, response to hypoxia, etc. The significantly enriched pathways, such as HIF-1 signaling pathway, calcium signaling pathway, macrophage stimulating protein MSP signaling network map, were closely related to atherosclerosis. Altogether, based on the comprehensive analysis and discussion, we revealed that TLR4/EGFR and IGF1R-CXCL12/CXCR4 pathways were at least partially implicated in the anti-atherosclerotic effects of anthocyanins through affecting inflammation, endothelial homeostasis, and foam cell formation. This study served as a theoretical basis for further validating the underlying anti-atherosclerotic mechanism of anthocyanins via in vitro and in vivo experiments.

摘要

动脉粥样硬化是一种慢性血管疾病,其特征是炎症无法消退并在动脉壁内形成斑块。动脉粥样硬化及其相关的心血管疾病是全球主要的死亡原因。我们之前的初步研究表明,新疆野生樱桃李(Prunus divaricata Ledeb)果皮中富含花青素的提取物(ACNE)具有抗动脉粥样硬化作用。然而,这种有益健康作用的潜在机制仍不清楚。在此,采用网络药理学结合分子对接来初步解决这个问题。ACNE主要含有矢车菊素、矢车菊素3 - 葡萄糖苷(Cy3Glu)、矢车菊素3 -(6'' - 乙酰葡萄糖苷)(Cy3AcGlu)、矢车菊素3 - 半乳糖苷(Cy3Gal)、矢车菊素3 - 木糖苷(Cy3Xyl)和矢车菊素3 - 芸香糖苷(Cy3Rut)。从核心蛋白质 - 蛋白质相互作用(PPI)网络中鉴定出七个关键靶点,即表皮生长因子受体(EGFR)、血管内皮生长因子A(VEGFA)、热休克蛋白90α家族成员1(HSP90AA1)、原癌基因酪氨酸蛋白激酶(SRC)、缺氧诱导因子1α(HIF1A)、CXC趋化因子受体4(CXCR4)和胰岛素样生长因子1受体(IGF1R)。通过分子对接初步证明了花青素与关键靶点的相互作用,特别是Cy3Rut和Cy3Xyl与大多数关键靶点具有最高亲和力。生物学功能分析表明,关键靶点参与了多个生物学过程,包括细胞迁移的正调控、磷酸化的正调控、炎症反应、缺氧反应等。显著富集的通路,如缺氧诱导因子 - 1(HIF - 1)信号通路、钙信号通路、巨噬细胞刺激蛋白(MSP)信号网络图谱,与动脉粥样硬化密切相关。总之,基于综合分析和讨论,我们揭示了Toll样受体4(TLR4)/EGFR和胰岛素样生长因子1受体(IGF)1R - CXC趋化因子配体12(CXCL12)/CXC趋化因子受体4(CXCR4)通路至少部分参与了花青素通过影响炎症、内皮稳态和泡沫细胞形成的抗动脉粥样硬化作用。本研究为通过体外和体内实验进一步验证花青素潜在的抗动脉粥样硬化机制提供了理论基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c46/12144020/99f66717de68/40643_2025_900_Fig1_HTML.jpg

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