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本土作物农艺、营养和叶脉性状的遗传图谱构建

Genetic mapping for agronomic, nutritional, and leaf vein traits in the indigenous crop .

作者信息

Simpson Conor J C, Sogbohossou Dêêdi E O, Reeves Gregory, Eric Schranz M, Singh Pallavi, Hibberd Julian M

机构信息

University of Cambridge, Department of Plant Sciences, Cambridge, United Kingdom.

Present Address: Karlsruhe Institute für Technologie Campus-Alpin IMKIFU, Garmisch-Partenkirchen, Germany.

出版信息

NPJ Sustain Agric. 2025;3(1):33. doi: 10.1038/s44264-025-00074-0. Epub 2025 Jun 6.

DOI:10.1038/s44264-025-00074-0
PMID:40485776
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12143976/
Abstract

is a nutrient-rich, climate-resilient, C under-utilised crop with potential to enhance food security in low-input farming systems. To support its genetic improvement, we performed linkage mapping using two F populations (213 and 187 individuals) derived from Malaysian and Malawian founder lines. Under controlled greenhouse conditions, populations were phenotyped for agronomic traits (plant height, leaf area, flowering time), nutritional content (carotenoids, tocopherols), and anatomical features linked to C photosynthesis (vein density, bundle sheath size). High-density SNP genotyping enabled construction of linkage maps and identification of 15 QTL. Shared QTL for plant size and flowering time across both populations suggest stable genetic control suitable for marker-assisted selection. Additional QTL for vein density and vitamin content provide insights into the genetic basis of agronomic traits and C physiology. These results offer foundational tools for pre-breeding and reinforce its potential as a model for C photosynthesis research and sustainable agriculture.

摘要

是一种营养丰富、适应气候变化、未得到充分利用的作物,有潜力在低投入农业系统中增强粮食安全。为支持其遗传改良,我们使用了来自马来西亚和马拉维亲本系的两个F群体(分别为213和187个个体)进行连锁图谱构建。在可控的温室条件下,对群体的农艺性状(株高、叶面积、开花时间)、营养成分(类胡萝卜素、生育酚)以及与C4光合作用相关的解剖学特征(叶脉密度、维管束鞘大小)进行了表型分析。高密度SNP基因分型使得能够构建连锁图谱并鉴定出15个QTL。两个群体中关于植株大小和开花时间的共享QTL表明存在适合标记辅助选择的稳定遗传控制。叶脉密度和维生素含量的其他QTL为农艺性状和C4生理学的遗传基础提供了见解。这些结果为预育种提供了基础工具,并强化了其作为C4光合作用研究和可持续农业模型的潜力。

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本文引用的文献

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Discovering and Mapping Colloquial Terminologies Describing Underutilized and Neglected Food Crops-A Comprehensive Review.发现并梳理描述未充分利用和被忽视粮食作物的通俗术语——全面综述
Foods. 2023 Jun 20;12(12):2428. doi: 10.3390/foods12122428.
2
A rapid method to quantify vein density in C plants using starch staining.使用淀粉染色快速定量 C 植物中的叶脉密度。
Plant Cell Environ. 2023 Sep;46(9):2928-2938. doi: 10.1111/pce.14656. Epub 2023 Jun 23.
3
C gene induction during de-etiolation evolved through changes in cis to allow integration with ancestral C gene regulatory networks.
在去黄化过程中 C 基因的诱导是通过顺式变化进化而来的,从而允许与祖先 C 基因调控网络的整合。
Sci Adv. 2023 Mar 29;9(13):eade9756. doi: 10.1126/sciadv.ade9756.
4
Forgotten food crops in sub-Saharan Africa for healthy diets in a changing climate.撒哈拉以南非洲被遗忘的粮食作物,应对气候变化的健康饮食之需
Proc Natl Acad Sci U S A. 2023 Apr 4;120(14):e2205794120. doi: 10.1073/pnas.2205794120. Epub 2023 Mar 27.
5
The Gynandropsis gynandra genome provides insights into whole-genome duplications and the evolution of C4 photosynthesis in Cleomaceae.黄鹌菜基因组揭示了大戟科植物基因组加倍和 C4 光合作用的进化。
Plant Cell. 2023 Apr 20;35(5):1334-1359. doi: 10.1093/plcell/koad018.
6
Renaming Indigenous crops and addressing colonial bias in scientific language.重新命名本土作物并解决科学语言中的殖民偏见。
Trends Plant Sci. 2022 Dec;27(12):1189-1192. doi: 10.1016/j.tplants.2022.08.022. Epub 2022 Sep 23.
7
Orphan Crops: A Best Fit for Dietary Enrichment and Diversification in Highly Deteriorated Marginal Environments.孤儿作物:高度退化边缘环境中饮食强化与多样化的最佳选择。
Front Plant Sci. 2022 Feb 24;13:839704. doi: 10.3389/fpls.2022.839704. eCollection 2022.
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Using breeding and quantitative genetics to understand the C4 pathway.利用繁殖和数量遗传学来理解 C4 途径。
J Exp Bot. 2022 May 23;73(10):3072-3084. doi: 10.1093/jxb/erab486.
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Optical topometry and machine learning to rapidly phenotype stomatal patterning traits for maize QTL mapping.光学拓扑测量学和机器学习在玉米数量性状定位中快速表型化气孔模式特征。
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