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CRISPR筛选和定量蛋白质组学揭示了通过PARP7活性对芳烃受体驱动的蛋白质组进行重塑。

CRISPR screens and quantitative proteomics reveal remodeling of the aryl hydrocarbon receptor-driven proteome through PARP7 activity.

作者信息

Gorelik Andrii, Paulo Joao A, Schroeter Christina B, Lad Melanie, Shurr Abigail, Mastrokalou Chara, Siddiqi Samrah, Suyari Osamu, Brognard John, Walter David, Matthews Jason, Palmer Timothy M, Gygi Steven P, Ahel Ivan

机构信息

Sir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, United Kingdom.

Department of Cell Biology, Harvard Medical School, Boston, MA 02115.

出版信息

Proc Natl Acad Sci U S A. 2025 Jun 17;122(24):e2424985122. doi: 10.1073/pnas.2424985122. Epub 2025 Jun 10.

Abstract

PARP7 is an enzyme that uses donor substrate NAD to attach a single ADP-ribose moiety onto proteins related to immunity, transcription, and cell growth and motility. Despite the importance of PARP7 in these processes, PARP7 signaling networks remain underresearched. Here, we used genome-wide CRISPR screens and multiplex quantitative proteomics in distinct lung cancer cell lines treated with a PARP7 inhibitor to better understand PARP7 molecular functions. We find that manipulating the aryl hydrocarbon receptor (AHR) transcriptional activity mediates PARP7 inhibitor sensitivity and triggers robust changes to the AHR-controlled proteome (AHR-ome). One of the striking features of such AHR-ome remodeling was the downregulation of filamins A and B concurrent with the induction of the corresponding E3 ubiquitin ligase ASB2. We also show that suppressor of cytokine signaling 3 (SOCS3) crosstalks to AHR. Inhibition of PARP7 in SOCS3 knockout cells leads to reduced viability compared to wild-type cells treated with a PARP7 inhibitor. Our results reveal signaling interplay between PARP7, AHR, and SOCS3 and establish an invaluable resource to study the role of PARP7 in the regulation of AHR signaling and innate immunity through its ADP-ribosyl transferase activity.

摘要

PARP7是一种酶,它利用供体底物NAD将单个ADP-核糖部分连接到与免疫、转录以及细胞生长和运动相关的蛋白质上。尽管PARP7在这些过程中很重要,但PARP7信号网络仍未得到充分研究。在这里,我们在使用PARP7抑制剂处理的不同肺癌细胞系中,利用全基因组CRISPR筛选和多重定量蛋白质组学技术,以更好地了解PARP7的分子功能。我们发现,操纵芳烃受体(AHR)的转录活性介导了PARP7抑制剂敏感性,并引发了AHR控制的蛋白质组(AHR组)的显著变化。这种AHR组重塑的一个显著特征是细丝蛋白A和B的下调,同时伴随着相应的E3泛素连接酶ASB2的诱导。我们还表明,细胞因子信号传导抑制因子3(SOCS3)与AHR相互作用。与用PARP7抑制剂处理的野生型细胞相比,在SOCS3基因敲除细胞中抑制PARP7会导致细胞活力降低。我们的结果揭示了PARP7、AHR和SOCS3之间的信号相互作用,并建立了一个宝贵的资源,用于研究PARP7通过其ADP-核糖基转移酶活性在AHR信号传导和先天免疫调节中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fb1f/12184497/5af01dc891c4/pnas.2424985122fig01.jpg

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