Ye Lin, Liu Xiaorui, Yang Jing, Pu Ji, Yang Caixin, Zhang Gui, Zhou Juan, Liu Yue, Jin Dong, Lu Shan, Xu Jianguo
Department of Epidemiology, School of Public Health, Shanxi Medical University, Taiyuan 030001, PR China.
National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, PR China.
Int J Syst Evol Microbiol. 2025 Jun;75(6). doi: 10.1099/ijsem.0.006821.
Four Gram-stain-positive, facultative anaerobic, yellow-pigmented and short rod-shaped strains, designated zg-Y625, zg-Y843, zg-Y1090 and zg-Y1211, were isolated from the intestinal contents of in Qinghai Province, PR China. Strains zg-Y625 and zg-Y1090 showed the highest 16S rRNA gene sequence similarities of 99.7% and 99.9% to DSM 112390, respectively, followed by 99.2% and 99.5% to JCM 14341 and 99.1% and 99.0% to LMG 32277. Phylogenetic analyses based on 16S rRNA gene sequences and phylogenomic analyses using whole-genome sequences revealed that these four strains belong to the genus , forming two separate clades distinct from all other known species. The genome sizes of strains zg-Y625 and zg-Y1090 were 3.26 and 3.07 Mb, respectively, with DNA G+C contents of 70.5 and 70.9 mol%. The average nucleotide identity and digital DNA-DNA hybridization values between each of the novel strains and the available members of the genus were all below the species thresholds. Both type strains contained diphosphatidylglycerol and phosphatidylglycerol as predominant polar lipids with one unidentified glycolipid for zg-Y625 and two unidentified glycolipids for zg-Y1090. The predominant respiratory quinone in zg-Y625 was MK-13, whilst in zg-Y1090, both MK-11 and MK-13 were identified as the major quinones. The major fatty acids (>10%) in strains zg-Y625 and zg-Y843 were anteiso-C, anteiso-C and iso-C, whereas for zg-Y1090 and zg-Y1211, the predominant fatty acids were anteiso-C and anteiso-C. Based on phenotypic, phylogenetic, genomic and chemotaxonomic data, two novel species in the genus are proposed, namely, sp. nov. (zg-Y625=GDMCC 1.3931=JCM 36203) and sp. nov. (zg-Y1090=GDMCC 1.3930=JCM 36205).
从中华人民共和国青海省的肠道内容物中分离出四株革兰氏阳性、兼性厌氧、黄色色素沉着且呈短杆状的菌株,分别命名为zg-Y625、zg-Y843、zg-Y1090和zg-Y1211。菌株zg-Y625和zg-Y1090的16S rRNA基因序列与DSM 112390的相似度最高,分别为99.7%和99.9%,其次与JCM 14341的相似度为99.2%和99.5%,与LMG 32277的相似度为99.1%和99.0%。基于16S rRNA基因序列的系统发育分析以及使用全基因组序列的系统基因组分析表明,这四株菌株属于该属,形成两个独立的进化枝,与所有其他已知的该属物种不同。菌株zg-Y625和zg-Y1090的基因组大小分别为3.26和3.07 Mb,DNA G+C含量分别为70.5和70.9 mol%。每株新菌株与该属现有成员之间的平均核苷酸同一性和数字DNA-DNA杂交值均低于物种阈值。两株模式菌株均以二磷脂酰甘油和磷脂酰甘油作为主要极性脂质,zg-Y625有一个未鉴定的糖脂,zg-Y1090有两个未鉴定