Dechathai Thitaporn, Singkhamanan Kamonnut, Yaikhan Thunchanok, Chusri Sarunyou, Pomwised Rattanaruji, Wonglapsuwan Monwadee, Surachat Komwit
Department of Biomedical Sciences and Biomedical Engineering, Faculty of Medicine, Prince of Songkla University, Songkhla 90110, Thailand.
Division of Infectious Diseases, Department of Internal Medicine, Faculty of Medicine, Prince of Songkla University, Songkhla 90110, Thailand.
Antibiotics (Basel). 2025 May 22;14(6):530. doi: 10.3390/antibiotics14060530.
is one of the most significant multidrug-resistant bacteria. It poses considerable challenges in terms of treatment and causes hospital-acquired infections that lead to high morbidity and mortality. Colonization by in a patient without clinical signs of infection is a concern in hospital settings, as it is an opportunistic pathogen and can potentially be a multidrug-resistant strain. The objective of this study was to characterize and provide a detailed genomic analysis of this strain of the PSU9449 genome, an isolate obtained from a patient at Songklanagarind Hospital, Thailand. : Whole-genome sequencing (WGS) and bioinformatics analysis were employed to examine the genomic features of PSU9449. We performed sequence type (ST) determination through multilocus sequence typing (MLST), identified antimicrobial resistance genes (ARGs), virulence factor genes (VFGs), and analyzed the presence of mobile genetic elements (MGEs). Additionally, we compared the PSU9449 genome with strains from neighboring countries to understand its phylogenetic relationship. : The PSU9449 genome contained five insertion sequences and several ARGs, including , , , and . It also harbored VFGs related to flagella (, , and ), the type 6 secretion system (, , and ), and the type 3 secretion system (, , and ). MLST identified PSU9449 as ST3777, which was reported in Thailand for the first time. Phylogenetic analysis based on core gene SNPs revealed that PSU9449 was closely related to HW001G from Malaysia and MyJU45 from Myanmar, forming a distinct clade. : This study presents a comprehensive genomic analysis of PSU9449, shedding light on its genetic characteristics, antimicrobial resistance profile, and virulence potential. Interestingly, ST3777, the novel STs from the published genomes of in Thailand, were assigned in this study. The findings enhance valuable insights into the expanding knowledge of PSU9449 and highlight the importance of ongoing surveillance of its genetic diversity.
是最重要的多重耐药菌之一。它在治疗方面带来了相当大的挑战,并导致医院获得性感染,从而导致高发病率和死亡率。在没有感染临床症状的患者中定植是医院环境中的一个问题,因为它是一种机会性病原体,并且可能是多重耐药菌株。本研究的目的是对从泰国宋卡纳卡林医院一名患者分离得到的PSU9449菌株的基因组进行特征描述并提供详细的基因组分析。方法:采用全基因组测序(WGS)和生物信息学分析来研究PSU9449的基因组特征。我们通过多位点序列分型(MLST)进行序列类型(ST)测定,鉴定抗菌抗性基因(ARGs)、毒力因子基因(VFGs),并分析移动遗传元件(MGEs)的存在情况。此外,我们将PSU9449基因组与来自邻国的菌株进行比较,以了解其系统发育关系。结果:PSU9449基因组包含五个插入序列和几个ARGs,包括 、 、 和 。它还含有与鞭毛( 、 和 )、6型分泌系统( 、 和 )以及3型分泌系统( 、 和 )相关的VFGs。MLST将PSU9449鉴定为ST3777,这是在泰国首次报道。基于核心基因单核苷酸多态性(SNP)的系统发育分析表明,PSU9449与来自马来西亚的HW001G和来自缅甸的MyJU45密切相关,形成一个独特的进化枝。结论:本研究对PSU9449进行了全面的基因组分析,揭示了其遗传特征、抗菌抗性概况和毒力潜力。有趣地是,本研究确定了泰国已发表基因组中的新型STs即ST3777。这些发现为深入了解PSU9449提供了有价值的见解,并强调了持续监测其遗传多样性的重要性。