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一种合理的晶体接触工程策略在聚对苯二甲酸乙二酯降解角质酶上的应用

Application of a Rational Crystal Contact Engineering Strategy on a Poly(ethylene terephthalate)-Degrading Cutinase.

作者信息

Walla Brigitte, Dietrich Anna-Maria, Brames Edwin, Bischoff Daniel, Fritzsche Stefanie, Castiglione Kathrin, Janowski Robert, Niessing Dierk, Weuster-Botz Dirk

机构信息

Biochemical Engineering, Department of Energy and Process Engineering, TUM School of Engineering and Design, Technical University of Munich, Boltzmannstraße 15, 85748 Garching, Germany.

Institute of Bioprocess Engineering, Department of Chemical and Biological Engineering, Friedrich-Alexander-Universität Erlangen-Nürnberg, Paul-Gordan-Straße 3, 91052 Erlangen, Germany.

出版信息

Bioengineering (Basel). 2025 May 23;12(6):561. doi: 10.3390/bioengineering12060561.

DOI:10.3390/bioengineering12060561
PMID:40564377
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12189717/
Abstract

Industrial biotechnology offers a potential ecological solution for PET recycling under relatively mild reaction conditions via enzymatic degradation, particularly using the leaf branch compost cutinase (LCC) quadruple mutant ICCG. To improve the efficient downstream processing of this biocatalyst after heterologous gene expression with a suitable production host, protein crystallization can serve as an effective purification/capture step. Enhancing protein crystallization was achieved in recent studies by introducing electrostatic (and aromatic) interactions in two homologous alcohol dehydrogenases (/ADH) and an ene reductase (ER1-L1,5) produced with . In this study, ICCG, which is difficult to crystallize, was utilized for the application of crystal contact engineering strategies, resulting in ICCG mutant L50Y (ICCGY). Previously focused on the Lys-Glu interaction for the introduction of electrostatic interactions at crystal contacts, the applicability of the engineering strategy was extended here to an Arg-Glu interaction to increase crystallizability, as shown for ICCGY T110E. Furthermore, the rationale of the engineering approach is demonstrated by introducing Lys and Glu at non-crystal contacts or sites without potential interaction partners as negative controls. These resulting mutants crystallized comparably but not superior to the wild-type protein. As demonstrated by this study, crystal contact engineering emerges as a promising approach for rationally enhancing protein crystallization. This advancement could significantly streamline biotechnological downstream processing, offering a more efficient pathway for research and industry.

摘要

工业生物技术通过酶促降解,特别是使用叶枝堆肥角质酶(LCC)四重突变体ICCG,在相对温和的反应条件下为PET回收提供了一种潜在的生态解决方案。为了在使用合适的生产宿主进行异源基因表达后改进这种生物催化剂的高效下游加工,蛋白质结晶可作为有效的纯化/捕获步骤。最近的研究通过在两种同源醇脱氢酶(/ADH)和一种用……生产的烯还原酶(ER1-L1,5)中引入静电(和芳香)相互作用来提高蛋白质结晶。在本研究中,难以结晶的ICCG被用于晶体接触工程策略的应用,产生了ICCG突变体L50Y(ICCGY)。以前专注于在晶体接触处引入静电相互作用的赖氨酸-谷氨酸相互作用,这里将工程策略的适用性扩展到精氨酸-谷氨酸相互作用以提高结晶性,如ICCGY T110E所示。此外,通过在非晶体接触处或没有潜在相互作用伙伴的位点引入赖氨酸和谷氨酸作为阴性对照,证明了工程方法的原理。这些产生的突变体结晶情况与野生型蛋白相当,但并不优于野生型蛋白。如本研究所示,晶体接触工程成为一种合理增强蛋白质结晶的有前途的方法。这一进展可以显著简化生物技术下游加工,为研究和工业提供更有效的途径。

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本文引用的文献

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Rational Introduction of Electrostatic Interactions at Crystal Contacts to Enhance Protein Crystallization of an Ene Reductase.合理引入晶体接触处的静电相互作用以增强烯还原酶的蛋白质结晶
Biomolecules. 2025 Mar 22;15(4):467. doi: 10.3390/biom15040467.
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Accurate structure prediction of biomolecular interactions with AlphaFold 3.利用 AlphaFold 3 进行生物分子相互作用的精确结构预测。
Nature. 2024 Jun;630(8016):493-500. doi: 10.1038/s41586-024-07487-w. Epub 2024 May 8.
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AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination.
AlphaFold 的预测结果是有价值的假说,可以加速但不能替代实验结构确定。
Nat Methods. 2024 Jan;21(1):110-116. doi: 10.1038/s41592-023-02087-4. Epub 2023 Nov 30.
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Using AlphaFold to predict the impact of single mutations on protein stability and function.利用 AlphaFold 预测单突变对蛋白质稳定性和功能的影响。
PLoS One. 2023 Mar 16;18(3):e0282689. doi: 10.1371/journal.pone.0282689. eCollection 2023.
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Current Knowledge on Polyethylene Terephthalate Degradation by Genetically Modified Microorganisms.关于转基因微生物对聚对苯二甲酸乙二酯降解的当前知识
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Recent advances in the discovery, characterization, and engineering of poly(ethylene terephthalate) (PET) hydrolases.聚对苯二甲酸乙二醇酯(PET)水解酶的发现、表征和工程改造的最新进展。
Enzyme Microb Technol. 2021 Oct;150:109868. doi: 10.1016/j.enzmictec.2021.109868. Epub 2021 Jul 8.
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Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15.
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Recent advances in biocatalysts engineering for polyethylene terephthalate plastic waste green recycling.生物催化剂工程在聚对苯二甲酸乙二醇酯塑料废物绿色回收方面的最新进展。
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