• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

来自美国田纳西州橡树岭国家实验室橡树岭保留地地下微生物群落的沉积物和地下水宏基因组。

Sediment and groundwater metagenomes from subsurface microbial communities from the Oak Ridge National Laboratory Oak Ridge Reservation, Oak Ridge, Tennessee, USA.

作者信息

Lui Lauren M, Nielsen Torben N, Smith Heidi J, Chandonia John-Marc, Kuehl Jennifer V, Song Fangchao, Sczesnak Andrew, Hendrickson Andrew, Hazen Terry C, Fields Matthew W, Arkin Adam P

机构信息

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.

Center for Biofilm Engineering, Montana State University, Bozeman, Montana, USA.

出版信息

Microbiol Resour Announc. 2025 Aug 14;14(8):e0001425. doi: 10.1128/mra.00014-25. Epub 2025 Jun 27.

DOI:10.1128/mra.00014-25
PMID:40576316
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12352057/
Abstract

We report 26 subsurface sediment and 9 groundwater metagenomes from the Oak Ridge Reservation at Oak Ridge, TN, USA. Samples were collected from various depths and phases (attached vs planktonic) to study subsurface microbial metabolism, the effect of contamination on microbial communities, and differences across groundwater and sediment microbial communities.

摘要

我们报告了来自美国田纳西州橡树岭橡树岭保留地的26个地下沉积物宏基因组和9个地下水宏基因组。样本从不同深度和阶段（附着态与浮游态）采集，以研究地下微生物代谢、污染对微生物群落的影响以及地下水和沉积物微生物群落之间的差异。

相似文献

1
Sediment and groundwater metagenomes from subsurface microbial communities from the Oak Ridge National Laboratory Oak Ridge Reservation, Oak Ridge, Tennessee, USA.来自美国田纳西州橡树岭国家实验室橡树岭保留地地下微生物群落的沉积物和地下水宏基因组。
Microbiol Resour Announc. 2025 Aug 14;14(8):e0001425. doi: 10.1128/mra.00014-25. Epub 2025 Jun 27.
2
Nitrate-Utilizing Microorganisms Resistant to Multiple Metals from the Heavily Contaminated Oak Ridge Reservation.从高度污染的橡树岭保留地中筛选出耐多种金属的硝酸盐利用微生物。
Appl Environ Microbiol. 2019 Aug 14;85(17). doi: 10.1128/AEM.00896-19. Print 2019 Sep 1.
3
Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone.地下关键带微生物群落的深度离散特征及地球化学特征。
Appl Environ Microbiol. 2023 Jun 28;89(6):e0050023. doi: 10.1128/aem.00500-23. Epub 2023 Jun 5.
4
Oak Ridge Reservation Environmental Protection Rad Neshaps Radionuclide Inventory Web Database and Rad Neshaps Source and Dose Database.橡树岭保留地环境保护放射性核素清单网络数据库以及放射性核素源与剂量数据库。
Health Phys. 2017 Jul;113(1):78-88. doi: 10.1097/HP.0000000000000682.
5
Viromes vs. mixed community metagenomes: choice of method dictates interpretation of viral community ecology.病毒组与混合群落宏基因组：方法的选择决定了病毒群落生态学的解释。
Microbiome. 2024 Oct 7;12(1):195. doi: 10.1186/s40168-024-01905-x.
6
Impacts on Sedimentary Microbial Communities Related to Temporal Changes in Trace Metal Concentrations.与痕量金属浓度的时间变化相关的对沉积微生物群落的影响
Geobiology. 2025 Jul-Aug;23(4):e70027. doi: 10.1111/gbi.70027.
7
Metagenome-Assembled Genome Sequences of Novel Prokaryotic Species from the Mercury-Contaminated East Fork Poplar Creek, Oak Ridge, Tennessee, USA.来自美国田纳西州橡树岭汞污染的东福克白杨溪的新型原核生物物种的宏基因组组装基因组序列。
Microbiol Resour Announc. 2021 Apr 29;10(17):e00153-21. doi: 10.1128/MRA.00153-21.
8
Shift in the metabolic profile of sediment microbial communities during seagrass decline.海草衰退期间沉积物微生物群落代谢特征的变化。
Environ Microbiome. 2025 Jul 22;20(1):93. doi: 10.1186/s40793-025-00750-1.
9
Comparative metagenomics indicates metabolic niche differentiation of benthic and planktonic Woeseiaceae.比较宏基因组学表明了底栖和浮游伍氏菌科的代谢生态位分化。
Environ Microbiome. 2025 Jun 17;20(1):74. doi: 10.1186/s40793-025-00732-3.
10
Interventions for replacing missing teeth: alveolar ridge preservation techniques for dental implant site development.缺失牙修复干预措施：用于牙种植位点开发的牙槽嵴保存技术
Cochrane Database Syst Rev. 2015 May 28;2015(5):CD010176. doi: 10.1002/14651858.CD010176.pub2.

本文引用的文献

1
Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone.地下关键带微生物群落的深度离散特征及地球化学特征。
Appl Environ Microbiol. 2023 Jun 28;89(6):e0050023. doi: 10.1128/aem.00500-23. Epub 2023 Jun 5.
2
Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology.跨尺度机制：一个整合实验室和野外研究的微生物生态学整体建模框架。
Front Microbiol. 2021 Mar 24;12:642422. doi: 10.3389/fmicb.2021.642422. eCollection 2021.
3
Using SPAdes De Novo Assembler.使用 SPAdes 从头组装。
Curr Protoc Bioinformatics. 2020 Jun;70(1):e102. doi: 10.1002/cpbi.102.
4
Characterization of subsurface media from locations up- and down-gradient of a uranium-contaminated aquifer.对铀污染含水层上下游位置的地下介质进行特征描述。
Chemosphere. 2020 Sep;255:126951. doi: 10.1016/j.chemosphere.2020.126951. Epub 2020 May 10.
5
Impact of hydrologic boundaries on microbial planktonic and biofilm communities in shallow terrestrial subsurface environments.水文边界对浅层陆地地下环境中微生物浮游生物和生物膜群落的影响。
FEMS Microbiol Ecol. 2018 Dec 1;94(12). doi: 10.1093/femsec/fiy191.
6
metaSPAdes: a new versatile metagenomic assembler.metaSPAdes：一种新型通用宏基因组序列拼接软件
Genome Res. 2017 May;27(5):824-834. doi: 10.1101/gr.213959.116. Epub 2017 Mar 15.
7
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.数千个微生物基因组揭示了含水层系统中相互关联的生物地球化学过程。
Nat Commun. 2016 Oct 24;7:13219. doi: 10.1038/ncomms13219.
8
Natural bacterial communities serve as quantitative geochemical biosensors.天然细菌群落可作为定量地球化学生物传感器。
mBio. 2015 May 12;6(3):e00326-15. doi: 10.1128/mBio.00326-15.
9
Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site.从核遗留废物场地高度污染的地下水中分离到的硫杆菌属反硝化细菌是该区域细菌群落的优势种群。
Appl Environ Microbiol. 2012 Feb;78(4):1039-47. doi: 10.1128/AEM.06435-11. Epub 2011 Dec 16.